mRNA_F-serratus_M_contig110.935.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig110.935.1
Unique NamemRNA_F-serratus_M_contig110.935.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.360e-27
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   31 DEKEDEEKGFNTTGNQEGNVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            +E+ D E+G NTT  QE  VKPIK LVRS+V+EATLLSNVGAEVSFQLPNDAS +F+ MLTE+D+RK ELG+ SYG+SVT
Sbjct:  950 EEENDNEQGVNTTATQEQGVKPIKHLVRSHVKEATLLSNVGAEVSFQLPNDASSSFQDMLTEIDSRKTELGVNSYGLSVT 1029          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: A0A6H5KQ87_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ87_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.180e-26
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   43 DEEKGFNTTGNQEGNVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            D E+G NTT  QE  VKPIK LVRS+V+EATLLSNVGAEVSFQLPNDAS +F+ ML+E+D+RK ELG+ SYG+SVT
Sbjct:  778 DNEQGVNTTATQEQGVKPIKHLVRSHVKEATLLSNVGAEVSFQLPNDASSSFQGMLSEIDSRKTELGVNSYGLSVT 853          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.630e-26
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   10 ALENG-TGDEKEDEEK-GFNTTGNQEGNVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            A E+G   +EK DEE  G N T  QE  VKPIKRLVRS+V+ ATLLSNVGAEVSFQLPNDAS +F+ MLTE+D+RKAELG+ SYG+SVT
Sbjct:  920 AFESGMNAEEKIDEEDIGVNNTAAQEAGVKPIKRLVRSHVKAATLLSNVGAEVSFQLPNDASPSFQGMLTEIDSRKAELGVNSYGLSVT 1008          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: A0A6H5KPW7_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.630e-25
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   55 GFNTTGNQEGNVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            G N T  QE  VKPIKRLVRS+V+EATLLSNVGAEVSFQLPN AS +F+ MLTE+D+RKAELG+ SYG+SVT
Sbjct:  798 GVNNTAAQEAGVKPIKRLVRSHVKEATLLSNVGAEVSFQLPNAASPSFQGMLTEIDSRKAELGVNSYGLSVT 869          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: D8LFQ4_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ4_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.800e-23
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   10 ALENGTGDE-KEDEEKGFNTTGNQEGNVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGI 246
            A E+GT  E K DE+ G N T  QE  VKPIKRLVRS+V+ ATLLSNVGAEVSFQLPNDAS +F+ MLTE+D+RKAELG+
Sbjct:  911 AFESGTSAEGKIDEDIGVNNTAAQEAGVKPIKRLVRSHVKAATLLSNVGAEVSFQLPNDASPSFQGMLTEIDSRKAELGV 990          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.630e-16
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   88 VKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            V PIK LVRS+V+ + LLS+VGAE+SFQLP++AS +F+ ML E+D RK ELGI SYGMSVT
Sbjct:  964 VGPIKALVRSHVKASVLLSDVGAELSFQLPSEASSSFKGMLLEMDDRKEELGINSYGMSVT 1024          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: A0A6H5JS94_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS94_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.950e-15
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   88 VKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            V PIK +VRS+V+ + LLS+VGAE+SFQLP++AS +F+ ML E+D RK ELGI SYG+SVT
Sbjct:  741 VGPIKAVVRSHVKGSVLLSDVGAELSFQLPSEASSSFKGMLLEMDDRKEELGINSYGVSVT 801          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: A0A6J0UX07_9SAUR (ATP-binding cassette sub-family A member 3 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UX07_9SAUR)

HSP 1 Score: 70.9 bits (172), Expect = 2.550e-12
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   85 NVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            N+  I RL+  YV +ATL SN GAE+SF LP +++  FEA+ TEL+ R+ ELGI SYG SVT
Sbjct:  772 NIGDISRLIHHYVPKATLESNAGAELSFILPKESTHRFEALFTELELRREELGIASYGASVT 833          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: UPI0014550BE2 (ATP-binding cassette sub-family A member 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550BE2)

HSP 1 Score: 70.5 bits (171), Expect = 3.480e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   85 NVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            NV  +  L+ SY+  A++ SNVGAE+SF LPN+AS TFEA+ T L+  K  LGI+SYG S+T
Sbjct:  605 NVNQVADLIHSYIPTASMESNVGAELSFILPNEASDTFEALFTHLEENKKVLGISSYGASIT 666          
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.510e-12
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   79 EGNVKPIKRLVRSYVREATLLSNVGAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT 270
            EG    I++LVR +VR+A +LS+VGAEV+FQLP +AS +F+ +L ELD  K+ L + SYGMSVT
Sbjct: 1039 EGASAEIEKLVRRHVRQAQVLSDVGAEVAFQLPTNASASFKPLLLELDDNKSALCVGSYGMSVT 1102          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig110.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZE9_ECTSI1.360e-2771.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ87_9PHAE1.180e-2672.37ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D7FZE8_ECTSI1.630e-2669.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPW7_9PHAE2.630e-2575.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LFQ4_ECTSI2.800e-2370.00ABC transporter domain-containing protein n=1 Tax=... [more]
D7FZA6_ECTSI1.630e-1667.21ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
A0A6H5JS94_9PHAE1.950e-1563.93ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6J0UX07_9SAUR2.550e-1256.45ATP-binding cassette sub-family A member 3 n=1 Tax... [more]
UPI0014550BE23.480e-1254.84ATP-binding cassette sub-family A member 3-like n=... [more]
A0A835YSC0_9STRA3.510e-1256.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig110contigF-serratus_M_contig110:2028..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.1e-23
Seed eggNOG ortholog2880.D7FZE9
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig110.935.1prot_F-serratus_M_contig110.935.1Fucus serratus malepolypeptideF-serratus_M_contig110 2030..2824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.5656486-CDS-F-serratus_M_contig110:2029..20481622928964.5656486-CDS-F-serratus_M_contig110:2029..2048Fucus serratus maleCDSF-serratus_M_contig110 2030..2048 -
1690962649.0373616-CDS-F-serratus_M_contig110:2029..20481690962649.0373616-CDS-F-serratus_M_contig110:2029..2048Fucus serratus maleCDSF-serratus_M_contig110 2030..2048 -
1622928964.5830166-CDS-F-serratus_M_contig110:2276..24491622928964.5830166-CDS-F-serratus_M_contig110:2276..2449Fucus serratus maleCDSF-serratus_M_contig110 2277..2449 -
1690962649.0546854-CDS-F-serratus_M_contig110:2276..24491690962649.0546854-CDS-F-serratus_M_contig110:2276..2449Fucus serratus maleCDSF-serratus_M_contig110 2277..2449 -
1622928964.5997162-CDS-F-serratus_M_contig110:2746..28241622928964.5997162-CDS-F-serratus_M_contig110:2746..2824Fucus serratus maleCDSF-serratus_M_contig110 2747..2824 -
1690962649.0713568-CDS-F-serratus_M_contig110:2746..28241690962649.0713568-CDS-F-serratus_M_contig110:2746..2824Fucus serratus maleCDSF-serratus_M_contig110 2747..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig110.935.1

>prot_F-serratus_M_contig110.935.1 ID=prot_F-serratus_M_contig110.935.1|Name=mRNA_F-serratus_M_contig110.935.1|organism=Fucus serratus male|type=polypeptide|length=90bp
FSSALENGTGDEKEDEEKGFNTTGNQEGNVKPIKRLVRSYVREATLLSNV
GAEVSFQLPNDASGTFEAMLTELDARKAELGITSYGMSVT
back to top

mRNA from alignment at F-serratus_M_contig110:2028..2824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig110.935.1 ID=mRNA_F-serratus_M_contig110.935.1|Name=mRNA_F-serratus_M_contig110.935.1|organism=Fucus serratus male|type=mRNA|length=797bp|location=Sequence derived from alignment at F-serratus_M_contig110:2028..2824- (Fucus serratus male)
TTCTCCTCGGCTTTAGAGAACGGCACGGGCGATGAGAAGGAAGACGAAGA GAAGGGATTCAACACCACTGGGAATCAGGTTTGTTGGAGTGTTCCTGGCT GGAGAGAATGATAGGAGGGGAACCAAGGCTTGCTCGTTCGTATTTGTCGG ATGTCCACGATGGCGAGAGGTTCAACTTCTTGTTGAAATCTCTCTGTCTC TCACTTGGCGGATACGTTTGGTTTTCGACGTTCAGACCCCGAAGGGCTGA GCGCGTTTCTGCTTTGCGCAACCATGAGGTTGTGGGCTGCTGCTAGTGTC ACCGCCAAGATTGCGTCATGACAGACTTTGGTCTGGTTTGATTTAGCTGC CTCTCCCCTCTCCCCCTCACGGCAGGAAGGAAACGTGAAGCCCATTAAGC GCCTGGTGCGGTCGTACGTTAGGGAGGCCACGCTGCTCAGCAATGTCGGT GCAGAGGTGTCCTTCCAGCTCCCCAACGACGCTTCAGGCACCTTTGAGGC GATGCTTACAGAACTCGACGCTCGCAAGGCCGAGCTCGGCATCACAAGGT TCGAAGTGGTCACGAATTTGTGTCGCCTTTACCACAGGTCTTTCGATGAT CAGTCTATAGCAGCTTGGATATCTTCATCACATATTGTCGAAGAACATAC TGTGTAAAACCACAAGCACCCAGCGCTTTGGCAGATGCTTGATTACCCTT CTCACTCAACCCTGCCAGCTATTTTTTTCCTTCATGTTTTGAGCTTGTCT GTGATTGCATTGATTTTGTGCCCCAGCTACGGTATGAGCGTGACAAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig110:2028..2824-

>mRNA_F-serratus_M_contig110.935.1 ID=mRNA_F-serratus_M_contig110.935.1|Name=mRNA_F-serratus_M_contig110.935.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig110:2028..2824- (Fucus serratus male)
TTCTCCTCGGCTTTAGAGAACGGCACGGGCGATGAGAAGGAAGACGAAGA
GAAGGGATTCAACACCACTGGGAATCAGTTCTCCTCGGCTTTAGAGAACG
GCACGGGCGATGAGAAGGAAGACGAAGAGAAGGGATTCAACACCACTGGG
AATCAGGAAGGAAACGTGAAGCCCATTAAGCGCCTGGTGCGGTCGTACGT
TAGGGAGGCCACGCTGCTCAGCAATGTCGGTGCAGAGGTGTCCTTCCAGC
TCCCCAACGACGCTTCAGGCACCTTTGAGGCGATGCTTACAGAACTCGAC
GCTCGCAAGGCCGAGCTCGGCATCACAAGGAAGGAAACGTGAAGCCCATT
AAGCGCCTGGTGCGGTCGTACGTTAGGGAGGCCACGCTGCTCAGCAATGT
CGGTGCAGAGGTGTCCTTCCAGCTCCCCAACGACGCTTCAGGCACCTTTG
AGGCGATGCTTACAGAACTCGACGCTCGCAAGGCCGAGCTCGGCATCACA
AGCTACGGTATGAGCGTGACACTACGGTATGAGCGTGACA
back to top