mRNA_F-serratus_M_contig11.916.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.916.1
Unique NamemRNA_F-serratus_M_contig11.916.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:731436..732225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.6574764-CDS-F-serratus_M_contig11:731435..7316361622928959.6574764-CDS-F-serratus_M_contig11:731435..731636Fucus serratus maleCDSF-serratus_M_contig11 731436..731636 +
1690962646.7044408-CDS-F-serratus_M_contig11:731435..7316361690962646.7044408-CDS-F-serratus_M_contig11:731435..731636Fucus serratus maleCDSF-serratus_M_contig11 731436..731636 +
1622928959.6739852-CDS-F-serratus_M_contig11:732026..7322241622928959.6739852-CDS-F-serratus_M_contig11:732026..732224Fucus serratus maleCDSF-serratus_M_contig11 732027..732224 +
1690962646.7150278-CDS-F-serratus_M_contig11:732026..7322241690962646.7150278-CDS-F-serratus_M_contig11:732026..732224Fucus serratus maleCDSF-serratus_M_contig11 732027..732224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.916.1prot_F-serratus_M_contig11.916.1Fucus serratus malepolypeptideF-serratus_M_contig11 731436..732224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.916.1

>prot_F-serratus_M_contig11.916.1 ID=prot_F-serratus_M_contig11.916.1|Name=mRNA_F-serratus_M_contig11.916.1|organism=Fucus serratus male|type=polypeptide|length=133bp
SGGHRARSTCEDAPRSAGDCSRRGSLRRGETASAARLSRGVQGLGGVYRG
QDKEEGAASRGRKGAGEENKPPCASSLGPRNPRGDRRSTTPGSQRPGSSQ
AISPRCLVCVEACDGRAEAGQGERKGFPRALAE
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mRNA from alignment at F-serratus_M_contig11:731436..732225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.916.1 ID=mRNA_F-serratus_M_contig11.916.1|Name=mRNA_F-serratus_M_contig11.916.1|organism=Fucus serratus male|type=mRNA|length=790bp|location=Sequence derived from alignment at F-serratus_M_contig11:731436..732225+ (Fucus serratus male)
AGCGGCGGCCACCGCGCTCGGTCGACGTGCGAGGATGCGCCGCGTTCTGC
GGGGGATTGTTCGAGGCGTGGAAGTCTCCGCCGAGGAGAGACGGCAAGCG
CTGCCCGTCTTTCGAGAGGCGTTCAGGGCTTGGGAGGCGTTTATCGCGGC
CAGGACAAAGAAGAAGGAGCGGCGTCTCGAGGAAGAAAAGGCGCGGGAGA
AGTGAGGGTTAGAGAGGTCGGGGATAGGGGGTGGTGGGTGGTAAAAGAAA
AGCTAATACCAAGGGGCACACATTCAACCAGTAGAATCCGTTGACGCAGA
TTACTCAGTAGATTTTTGGAAACATTGTTTGTTGGTTTTCCCTTTTCCCC
AACTCTTGTCTTAAAAGAGACATACAGACTCTGTGGTGTACACGTTGTCC
ACTTAAAATTAACGTTGGACGTGGATTTGAAACTGGCATCACACCATCTC
TCTATCAAAAGCACTTGGATTTATTTGCCTCCCGAGAGTCTGCACCAAAA
CATGCTCTTCGGGCTGCAGTTGGTAGCGAAGCGACGTTTGGCTGGAGTGT
GAAGTCACCCTGTTGTGTGAAATATTCCGTTCTGCTTGCAGGAGAATAAG
CCGCCGTGCGCTTCAAGCTTGGGCCCACGAAACCCACGTGGAGATCGTCG
GTCGACAACGCCAGGAAGCCAGAGACCTGGCTCGTCGCAGGCTATCTCTC
CGCGGTGCCTTGTGTGCGTGGAAGCGTGCGACGGTCGAGCTGAGGCGGGC
CAGGGAGAACGTAAAGGCTTCCCACGAGCACTTGCGGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:731436..732225+

>mRNA_F-serratus_M_contig11.916.1 ID=mRNA_F-serratus_M_contig11.916.1|Name=mRNA_F-serratus_M_contig11.916.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig11:731436..732225+ (Fucus serratus male)
AGCGGCGGCCACCGCGCTCGGTCGACGTGCGAGGATGCGCCGCGTTCTGC
GGGGGATTGTTCGAGGCGTGGAAGTCTCCGCCGAGGAGAGACGGCAAGCG
CTGCCCGTCTTTCGAGAGGCGTTCAGGGCTTGGGAGGCGTTTATCGCGGC
CAGGACAAAGAAGAAGGAGCGGCGTCTCGAGGAAGAAAAGGCGCGGGAGA
AAGCGGCGGCCACCGCGCTCGGTCGACGTGCGAGGATGCGCCGCGTTCTG
CGGGGGATTGTTCGAGGCGTGGAAGTCTCCGCCGAGGAGAGACGGCAAGC
GCTGCCCGTCTTTCGAGAGGCGTTCAGGGCTTGGGAGGCGTTTATCGCGG
CCAGGACAAAGAAGAAGGAGCGGCGTCTCGAGGAAGAAAAGGCGCGGGAG
AAGAGAATAAGCCGCCGTGCGCTTCAAGCTTGGGCCCACGAAACCCACGT
GGAGATCGTCGGTCGACAACGCCAGGAAGCCAGAGACCTGGCTCGTCGCA
GGCTATCTCTCCGCGGTGCCTTGTGTGCGTGGAAGCGTGCGACGGTCGAG
CTGAGGCGGGCCAGGGAGAACGTAAAGGCTTCCCACGAGCACTTGCGGAG
GAGAATAAGCCGCCGTGCGCTTCAAGCTTGGGCCCACGAAACCCACGTGG
AGATCGTCGGTCGACAACGCCAGGAAGCCAGAGACCTGGCTCGTCGCAGG
CTATCTCTCCGCGGTGCCTTGTGTGCGTGGAAGCGTGCGACGGTCGAGCT
GAGGCGGGCCAGGGAGAACGTAAAGGCTTCCCACGAGCACTTGCGGAG
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