mRNA_F-serratus_M_contig107.664.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE) HSP 1 Score: 173 bits (438), Expect = 2.870e-44 Identity = 128/342 (37.43%), Postives = 167/342 (48.83%), Query Frame = 1 Query: 4 CSKLF-PSRGGRKSAGMFTCLVPSGCVWAERTLLTRESPMDVVDIIAELVVPPNLLIYNAACQTVRAFEQRCPGLL-DNGGKLPRLPVEAGSTAVGRVVLPHLAHLGNHSGTASQMTPRASSVNTPNRVSCQDVYALKHFSLPQPTPQSQVDEHNALYTAAKIEGGGAGPATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQRHGVQGQGVPGSGGAEGGAGVPTAGETVVHHEAAKFLRVLLFCLVGDK-AGNAPSFPTWLADGATFEGVLVEGLRRYAKDKEDFWVNGLQPGGAGERTRAARAVRSGIGLGRGIYSM 1020 CSK F RGG +AGM P+G + A + L T ESP DVVD + + V P LL Y+AAC+ V+ E+ CP LL D G L R G VV P L H+GN+ +A++ T + + P +D+YA+ + P+P QS+VD AL+ AAK G ++L ATRAL AL RDGV +LSLFEVLVF+Y+WH +AA + L G + A + P+WL EG L GLRRYAK K DF V+ L+P A R RAA AVR GIG GR +Y++ Sbjct: 649 CSKQFLGGRGGVATAGMVCVFTPAGVMVAWKVLPTAESPNDVVDFMRWMKVKPYLLSYDAACKLVKELEKYCPALLKDKTGVLQR-------DGEGNVVFPELVHVGNNRNSATRETAARTFQDLPRTTDREDMYAVIETAGPRPGLQSEVDSDEALFWAAKFSKV-VGGQSKLTATRALDALHRDGVRVLSLFEVLVFTYYWHRKAAGDATXXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXLSGSRRASRVSALPSWLHASCISEGELETGLRRYAKAKVDFVVDCLKPLTAEVRERAAIAVRGGIGFGRDVYAL 969
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE) HSP 1 Score: 112 bits (281), Expect = 5.460e-25 Identity = 92/256 (35.94%), Postives = 128/256 (50.00%), Query Frame = 1 Query: 286 RVVLPHLAHLGNHSGTASQMTPRASSVNTPNRVSCQDVYALKHFSLPQPTPQSQVDEHNALYTAAKIEGGGAGPATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQR--HGVQGQGVPGSGGAEGGAGVPTAGETVVHHEAAKFLRVLLFCLVGDKAGNAPSFPTWLADG-------ATFEGVLVEGLRRYAKDKEDFWVNGLQPGGAGERTRAARAVRSGIGLGRGIYSMVS 1026 RV LP LAHLG+++ + + P+ P R S D+ ALK + QSQV+ ++ L+ +A+ +G A LAATRA+AAL G+ +LSLFEVLVF+Y W ++ LG GWT +R HGV VP AE + +TV A K +R +L G + G P W G +T ++GL YA K F V+G+QP G ER A +R GIG G YS+++ Sbjct: 57 RVFLPALAHLGSNNASTTVEAPQVFLPVPPKRDSKVDLCALKAAAQGDRV-QSQVNVYDLLHASAETQGP-VPKAANLAATRAVAALWEAGIRVLSLFEVLVFTYVWLRNITEDEPDMLELGATGWTLRRPSHGV----VPVGTTAE-------SVDTVSTGAAEKHVREVLVVARGVRNGKGACLPDWFGAGDFVDGETSTLYAAQLDGLHAYAVAKTKFMVDGVQPIGEKERKIAESVIRCGIGYAAGEYSIMA 299
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 6.870e-18 Identity = 74/197 (37.56%), Postives = 101/197 (51.27%), Query Frame = 1 Query: 157 PNLLIYNAACQTVRAFEQRCPGLLDNGGKLPRL------------------PVEAGSTA-VGRVVLPHLAHLGNHSGTASQMTPRASSVNTPNRVSCQDVYALKHFSLPQPTPQSQVDEHNALYTAAKIEGGGAGPATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQR--HGV 684 P L +Y+A C+ V E+ PG+L N G+ RL E G A R+ L LAHLG++S + + P+ S P R S DVYALK + Q+QV+ ++ L+ +A+ +G A LAATRA+AALR G+ +LS FEVLVF+Y W A + LG GWT +R HGV Sbjct: 250 PVLGMYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPRIFLQALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGDRV-QNQVNVYDLLHASAETQGP-VPEAVNLAATRAVAALREAGIRVLSFFEVLVFTYVWLRNIAEDEPGMLELGATGWTLRRPSHGV 444
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 3.260e-15 Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 1 Query: 286 RVVLPHLAHLGNHSGTASQMTPRASSVNTPNRVSCQDVYALKHFSLPQPTPQSQVDEHNALYTAAKIEGGGAGPATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQR--HGV 684 RV P LAHLG+HS + + P+ S P R S DVYALK + QSQV+ ++ L+ +A+ +G A LAATRA+A LR GV +LSLFEVL+F+Y W A + LG GWT +R HGV Sbjct: 402 RVFFPALAHLGSHSSSTTVEAPQVSVPVPPKRDSKVDVYALKAAAQGDRV-QSQVNVYDLLHASAETQGP-VPKAVNLAATRAVAGLREAGVRVLSLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRRPSHGV 534
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5JT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT09_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 6.520e-11 Identity = 71/221 (32.13%), Postives = 97/221 (43.89%), Query Frame = 1 Query: 286 RVVLPHLAHLGN----HSGTASQMTPRASSVNTP----NRVSCQDVYALKHFSLPQPTPQSQVDEHNALYTAAKIEGGGAGPATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQRHGVQGQGVPGSGGAEGGAGVPTAGETVVHHEAAKFLRVLLFCLVGDKAGNAPSFPTWLADG-------ATFEGVLVEGLRRYA 903 R+ PH H + H+ A+ P + P R S DVYALK + QSQ++ ++ L +A+ +G A LAATRA+AALR G+ +L LFEVL+F+Y W A + LG GWT +R +P AE V T +A K LR +L G + G P W G +T V+GL YA Sbjct: 4 RMASPHPHHAPSCRRWHTSAATAQVPPSKHRKFPYLYHQRDSKVDVYALKAAAQGDRV-QSQLNVYDLLLASAETQGP-VPKAVNLAATRAVAALREAGIRVLFLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR-------LPVGTTAESVDAVSTG-------DAEKHLREVLVVARGARNGKGACLPDWFGAGDFVNGDTSTLYATQVDGLHAYA 208
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5KPP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP6_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 6.600e-10 Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 319 NHSGTASQMTPRASSVNTPNRVSCQDVYALKHFSLPQPTPQSQVDEHNALYTAAKIEGGGAGPATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQR--HGV 684 N+S + + P+ S TP R S DVYALK + Q+QV+ ++ L+ +A+ G A LAATR +AALR + ++SLFEVL+F+Y W A + +G GWT +R HGV Sbjct: 15 NNSASTTVEAPQVSLPVTPKRDSKVDVYALKAAAQGDRV-QNQVNVYDLLHASAETRGP-VPKAVNLAATRDVAALREAAIRVISLFEVLIFTYVWLRNIAEDEPGMLEIGAPGWTLRRPSHGV 136
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.240e-7 Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1 Query: 4 CSKLFPSRGGRKSAGMFTCLVPSGCVWAERTLLTRESPMDVVDIIAELVVPPNLLIYNAACQTVRAFEQRCPGLLDNGGKLPRLPVEAGSTAVGRVVLPHLAHLGNH 324 CSKLF + +AG+ G +T ES DVVDI+A ++V P L+I + C+ V E+ PGLL +GG LPR A G+V L L H+G H Sbjct: 10 CSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPR-------DAEGQVCLKELQHIGAH 109
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Match: A0A6H5K0A2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A2_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 2.320e-7 Identity = 52/143 (36.36%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 508 ATQLAATRALAALRRDGVSILSLFEVLVFSYHWHVQAAPSRSEVAVLGDDGWTRQR--HGVQGQGVPGSGGAEGGAGVPTAGETVVHHEAAKFLRVLLFCLVGDKAGNAPSFPTWLA-------DGATFEGVLVEGLRRYAKD 909 A LAATRA+AALR G+ ++SLFEVL+F+Y A + + L GWT +R HGV VP AE V T+ +A K LR +L G + G P WL D +T + V+GL YA + Sbjct: 148 AVNLAATRAVAALREAGIRVISLFEVLIFTYVGLRNIAEDKPGMLELVATGWTLRRPFHGV----VPVGTTAESLDAVSTS-------DAEKHLRKVLVVARGARNGKGACLPDWLVAEDFVDGDTSTLYAIQVDGLHAYAAE 279 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig107.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig107.664.1 >prot_F-serratus_M_contig107.664.1 ID=prot_F-serratus_M_contig107.664.1|Name=mRNA_F-serratus_M_contig107.664.1|organism=Fucus serratus male|type=polypeptide|length=329bp MFTCLVPSGCVWAERTLLTRESPMDVVDIIAELVVPPNLLIYNAACQTVRback to top mRNA from alignment at F-serratus_M_contig107:9277..11687+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig107.664.1 ID=mRNA_F-serratus_M_contig107.664.1|Name=mRNA_F-serratus_M_contig107.664.1|organism=Fucus serratus male|type=mRNA|length=2411bp|location=Sequence derived from alignment at F-serratus_M_contig107:9277..11687+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig107:9277..11687+ >mRNA_F-serratus_M_contig107.664.1 ID=mRNA_F-serratus_M_contig107.664.1|Name=mRNA_F-serratus_M_contig107.664.1|organism=Fucus serratus male|type=CDS|length=1974bp|location=Sequence derived from alignment at F-serratus_M_contig107:9277..11687+ (Fucus serratus male)back to top |