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Homology
BLAST of mRNA_F-serratus_M_contig105.509.1 vs. uniprot
Match: A0A6H5L1I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I7_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.310e-17 Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 49 ESEVVIALGSRTTILHPEIKRHRAWWQEILRSRVEEKLAKRVSSPAKDS-----SSLLVDGQGHAHVRLLEKVAVLLS 267
ESE V+ALGSRTT LHPE+KRHRAWW+EIL V LA+RV SP +SLLVDG+ H HV LLE + +
Sbjct: 11 ESEAVLALGSRTTTLHPELKRHRAWWREILSKNVLRTLAERVVSPPAAEKGHAPTSLLVDGERHPHVDLLEDLGAFFT 88
BLAST of mRNA_F-serratus_M_contig105.509.1 vs. uniprot
Match: D8LKG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG5_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.580e-16 Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 49 ESEVVIALGSRTTILHPEIKRHRAWWQEILRSRVEEKLAKRVSSPAKDS-----SSLLVDGQGHAHVRLLEKVAVLLS 267
ESE V+ALGSRTT LHPE+KRHRAWW+EIL V LA RVSSP SSLLV+G+ H HV LLE + S
Sbjct: 11 ESEAVLALGSRTTTLHPELKRHRAWWREILSKNVLRALADRVSSPPAAEKGHAPSSLLVEGERHPHVDLLEDLGAFFS 88
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 317 |
Cds size | 312 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928875.1982117-CDS-F-serratus_M_contig105:317229..317355 | 1622928875.1982117-CDS-F-serratus_M_contig105:317229..317355 | Fucus serratus male | CDS | F-serratus_M_contig105 317230..317355 - |
1690962610.1567347-CDS-F-serratus_M_contig105:317229..317355 | 1690962610.1567347-CDS-F-serratus_M_contig105:317229..317355 | Fucus serratus male | CDS | F-serratus_M_contig105 317230..317355 - |
1622928875.218764-CDS-F-serratus_M_contig105:322375..322561 | 1622928875.218764-CDS-F-serratus_M_contig105:322375..322561 | Fucus serratus male | CDS | F-serratus_M_contig105 322376..322561 - |
1690962610.168434-CDS-F-serratus_M_contig105:322375..322561 | 1690962610.168434-CDS-F-serratus_M_contig105:322375..322561 | Fucus serratus male | CDS | F-serratus_M_contig105 322376..322561 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928875.2316847-UTR-F-serratus_M_contig105:322561..322564 | 1622928875.2316847-UTR-F-serratus_M_contig105:322561..322564 | Fucus serratus male | UTR | F-serratus_M_contig105 322562..322564 - |
1690962610.1758509-UTR-F-serratus_M_contig105:322561..322564 | 1690962610.1758509-UTR-F-serratus_M_contig105:322561..322564 | Fucus serratus male | UTR | F-serratus_M_contig105 322562..322564 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig105.509.1 >prot_F-serratus_M_contig105.509.1 ID=prot_F-serratus_M_contig105.509.1|Name=mRNA_F-serratus_M_contig105.509.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MTSRVEMSTSTSVLSESEVVIALGSRTTILHPEIKRHRAWWQEILRSRVE EKLAKRVSSPAKDSSSLLVDGQGHAHVRLLEKVAVLLSRQVEDGVFISLG EAAS back to topmRNA from alignment at F-serratus_M_contig105:317230..322564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig105.509.1 ID=mRNA_F-serratus_M_contig105.509.1|Name=mRNA_F-serratus_M_contig105.509.1|organism=Fucus serratus male|type=mRNA|length=5335bp|location=Sequence derived from alignment at F-serratus_M_contig105:317230..322564- (Fucus serratus male) GAGATGACTAGCCGGGTTGAGATGAGCACGTCTACCTCCGTGCTTTCGGA
AAGCGAAGTGGTCATTGCTCTCGGGAGCCGAACCACGATCCTCCACCCTG
AAATAAAGCGGCACAGGGCGTGGTGGCAAGAGATATTGAGATCGCGGGTT
GAAGAAAAGCTCGCCAAGCGCGTCTCCTCCCCTGCGAAGGTGTGGTTGAT
CACATCATGATACCATGAAACAAGTTTCATTGTAGCATGTTTCGTGCTTG
ATACCGGCTTATTTTCTTCAGTAGAGCTTGCTTGGATGCACCACGCGATT
CCTGCACCGCAAACGATCGTATCCGTTTCTTCTAAGTGTACCTTGTACCT
GACAGCCACACTTGTAAATTGTACCATCGATATTGATATGTACAACAGCA
GTATGTCATAGTGTAGTGTAACATAATTGCTTCGCGCAACTGGTGACTTG
ACAAGTACTTTCTATCTTTCCCTTGTGAGTAAGATACCAGTATGTTACAA
CTTACCAACATTTCACGTTAGCACAACCGTTTTTCCAGTACAGTTAGTAG
TGCCCCCAGTTTTACCTCGAGTATTGCGGTGCCGTACATGTGGCAGCTTT
CTTTCGCGTGGGCCATCTACACAGCAGCCGTGCAAGCTGGTGATTTTGCG
ACGGTCTTGTGCTTCTAGTTTGACGTACAGACAGACAACCATTGATGACG
TGACCAATTGACCTGAAAAACACCCGTCCACTTTGTTAGGCTCTGTCTTA
ACGACGAGATAGAATATATTCATATAGAATCTGTATGATTACAGATTCCG
TCGACAGATCCTATTTTGGGTCCGAACGACCATATTAGGAAATCCGGTGT
CATAAGACAGTCACGCTTCCGAGTTATTTTTAACATCTACACACTGGTGA
GGGCGGCATAGGGCGGACAGCGTAACGAGGTTCGATCTCGCTCGAACCTC
GAACTTGCGCCCCCCTCGGAGCTCCGCTATCTAGGGCGCTTGCAAGCCGA
CAGTCAAGCCTCCCCATGAACCATGACTGCCAACAGACTGCAACGAACTA
CTTAACCAAAGTCGGGCATACACAGAGCACCAGATTTTTTTTTGCGTTTC
ACAAGCTCCTCAAGCGATATATGAAAGCCCAATAGCTCGTGCAGTACATG
GTACCATGGTACCTCGCGCGTTGTTTGGGGGCGTCCGGAATACATCAAAC
TCGGTGTACTCGTCGGACTCGTGACTGCTGTTGTCCAGACCCAGCCAGCG
TTATACTCGGATATCCGTTATGATACTGTTGTTTTCATTACGTAGCAGCT
GTTGTCTTTTTTTTTGTTGGTATCAGTTGTACTGTTGGTTCCAGTGTGTA
GCAGCTGATGTCGTTTCTTTTTTTGGTCTCAGTTGTACTTTTTCTATTAC
TAGTAACGTAGCAGGTATGTGTGTTTTTTCTTGTCATCGAATAATTTTGC
ACGACAGAATCTACGTAGAACAGAACGAAAGTGTCGGTGTCTGTGTGTGT
GTGTGTTTATTAGATTGCACCTAACCGCGCAACCCGGCTCTGCCATCCTA
GTCATTCTATGCCACTCGCATTGATCCTGTGTGTGTGTGTATTTTCTTCC
TATTCATTCTGGACCTCAAGTTCGTTGGACGTACCAGCCGGGGTCACACA
GGAGGAAGGTGGCACAGGATTTCTTATCCACCTTCCTTCTGCGGTGCGTG
CGTTAATTTTCTCGCGAGAATGATTTAGCTATTCCTTTCCCTCGTCGACC
GTGAAGTCGAATTTTGTGTACTAACGATTTAGACTAATCGTTCTCCACTC
GTTCAATTTTTATCAGATTATATTAAGTCAAAACAATCAGTTAGAATCTG
TCCACCCGACAGATTCCGTCGTGTTCAGAACTTGCCGTCTAGTAGTGTCG
AGCTCATTTGGCCAATCACAGAGCTATATTCTCGACAGAGCCTGTCGACA
GATTCTGATAACAGATTCTATCTCGACGTTAAGACAGGGCCTTGACCCGG
ACGAGACAGCCGGCCCTGTCTTGCGAGGCCAAATTCTCAGGCGCGAACGG
GGACTGGGAAATATTTATTTTACTGATTAGTAGCTAACCGCGAGCAGGAT
CGGCAGCCTTACCCGGTTGATCCATGCTCTGCTACTGGACAGAGCAGAGT
GAGGACCGTGCACACATACATAGTGTTTGTTGTATCAACAGTGGGTGTGG
GAAAAGAGGGACAAAAGAGGATCCATGGGTTTCCTACATAGGCAGCACCC
GTTACCCGAACTATCTTGAGGACTAACGGCCTTGCGCGAATGGCCTTGTG
CCGGCGGACTCTCGGCGATAAACGCCATCGGTACGCATTTTCGTGACCCG
ACGAACTCGGTACTGAACCGATGGCGGTTGGCGGCATGTATGTTTGTATG
GTGAGCACTTAGATGCACGCCGTCGCGGAAAGCGAAGGGGTCCGCGAGTA
AGCACCAGATTCAGCCTGTTTATAGAGATTGAGTGGGCTGGCGCGGGACG
GGACGGCCGAAGCCGTCTCGCGAGACCAAATTCGGCGCAAAAGGTGGTGG
GGAAAAACTTGTTTCCCCTTTTCAGCTGGCCATGGAGCAGCAATGGTAAC
CATACCCGGTTGATCCACAATCTGCTGAAAGTTCTGACGTTACATGTACC
CCTGGAGTGTACCGGTTTCGGTTTTTGGAGGAATTTCGCGTCCCGCGATA
CAATTTGTGTGTGTCTGTGTTTAGCAGAATAGGGGCTCCAACTAAGCATG
GCTGCCAATTCTGCTTTGTTGTCGCGTCGAAACGGGGAAGATGAAACTCC
CTTATCCCTGTCCGCGCCTGAGAATCTGGTCTAGCGAGACAGGTTTGGAT
GTCCCGTTAGGCGTCAGCCAGCTCATTCTCCACGCCCAGGCTGGCCTTTA
TGCCTTCCTCTCGTTCCACGGTGTACCTCTCTCTACGATTAGCAAGTCTG
CACTGAGGATATGTAGAGCCGCGGCTGTATGGTATGGTAGTCGTATATAG
CAGAGTATGGATCAACCGGGTAAAGTTGCCAATCCTGCTCGTGGTCAGCT
GAAGAGGGAAAATGAACATTTCCCTGTCCCCGTTCGCGCCTGAGAATTTG
GTCTCGCGAGACGGGTTCTGCCGTCCCGTCCCGTGTCAGCCTGCTCATTC
TCTATACTCGGGCTGAATCTGGTGCTCACTCGCGGGATTCCTCACGAGTT
TCGCGGCGGCGTCCATTTATTGCGAGCGTAGTGAGCTTCTAATCTGGCAG
GGGCATCAATTTGGGCTCGGGTGTATCAAAGACTGTGCACATTGACCAAT
CTGAATACCATTTCGGCATCTCGGATTCGTGTCGACCAATAAACATTCTG
CTTATATGTGGAAATTCTTTAGAAATTTCGGCACGGCCTATGTTCTATTC
CGGGGGCGAAAAGTTCTTTTTTTGCGAGCGTAGTGAGCTTCTCATTTGCA
GGGTGCATCAATTTGGGCTGCAGTGTATCAAAAACTGTTCACTGTTTGTA
TGTAGGGTGTGTTGGATTTGCACGGCGAAAAAAAACGTAGGCGAGAACCA
GGGTGAGATGGGAATATCCTTAAGAGACACAGGATGCTGCATAGTAAAGG
GTTCTGCTGGATATTCCGGTTGTACAGGCCTTCACGCCCTCTTGAACAAT
CTCGAACACAGGGTTTTCTGCGCACGGAGTCTACTGCTGTACAAAAGTGT
GCCCGTAATAGAACATAATTTGCATCGGGTTCAAAAGTCGCTGGCGAGAA
CCGGGGAGAGATGGAAAATTTCTGAGGATTCTACGCATAGAGGGTTCTGC
CGAACACTCCCGTTGTACAAGTGTATAGATAGACCTTCACGCTCTCATCA
TGAATAATTTCGAACACAGGGTTCTGCGCATAGAACGTATTGGTACTGCT
GTACAAAGATGTGCTAGTAGGAGTACTGAGTTTGCATCGCGATAAAAAAT
CGTACCTGGTAGGTGAGAACCGGGGAGAGATGGGTTCTGCTGGACACTCC
CGTTGTACAGACCTTCACGCTCTCTTGAACAATTTCGAACACAGGGTTGT
CTGCCTATAATGTCTTCTGCTGTGCAAAGGTGTGCTCGTAATAGAACAGA
ATTTGTATCGGGATCAAAACTCGGTGACAAAAACCGGGGAGAGATCTACT
CGTAGAAGGTTCTGCTGAACATTCCCGTTGTACGCCCCGGTTGCTCAGAA
GTAACCTCGTAACCTTCTGACACGTTGGGACGTAAGTTCGAATCCCGGTA
AACGGAACTTTTTCTCACTAAAAAATGAAATTAAAATAAAATGCCCAAGT
GGAGAACGATTAATTCGGGAAAGGAACGGCTGAATCCTTCTCGCGAGAAA
AATAAAGGCATGCACCACAGAAGAAAGGTGGATGAGAAATTATCTGTGAC
CTTCCTCCTGTGTGACCCCGGCTGGTACATCCAACGAACTTGACGTCTAG
AATAAATGGGAAGAAAACACACACACACACACACACACACACACACAGAA
ACCGCTAAAAAGTTGTAGACGCCAAGGGGAAAACGGGGGAGACTTCGGCG
GAAAGAGGAAGAGATGTAGAAAAGAAAGGATCGATCCAGTAGCTGCCAAC
TCAGATAATGTAGAGAGAAACAAGGAAGCAGGGGGGGGAGCACAAGGAAC
TCTGGGTTTAAGTAAGAATTGTACAAGTAGAGAGAGCGTGTCCCCTTTGT
CGCGTCTGATCAGAGGTTTTCGTATTAAGTATCATTGATCCCCCCTCGGA
AGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGC
GTGGTTATGTGCAATTTAATAAATACACACACACACACACACACACACAC
ACACACACACACACACACGCACGCACACACCTGCATTCCTTATTTTCATC
CCCATTATCGGCTTATTTTAGTTTCTTGGCAAGTTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTTTTTGGGGGGGGGTTGTTCCTAACTTCTTCCACC
CCCCCCCCCCACCTTTACCCCGATGCCCCCTCCTTCCTACATAAAAATCT
TCTGTAAGGCGTCAGACGTTTTGCTGCCTACGCGCGGGGCTTCCCCGTAG
CCCTCATATCCCATCCCACATTACTCCCCCATCGTTTACCACCGATATTC
CCTTCTTAATACTTGCATCATAGAGCTAACACGACGGTGTCATACTTCAT
GCGTTGCAGGACTCTTCATCGCTGCTCGTGGACGGTCAGGGCCACGCCCA
CGTGCGTCTCCTGGAGAAAGTCGCGGTTTTGTTGTCGAGACAGGTCGAGG
ATGGGGTGTTCATCTCTCTCGGGGAGGCAGCGTCG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig105:317230..322564- >mRNA_F-serratus_M_contig105.509.1 ID=mRNA_F-serratus_M_contig105.509.1|Name=mRNA_F-serratus_M_contig105.509.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig105:317230..322564- (Fucus serratus male) ATGACTAGCCGGGTTGAGATGAGCACGTCTACCTCCGTGCTTTCGGAAAG CGAAGTGGTCATTGCTCTCGGGAGCCGAACCACGATCCTCCACCCTGAAA TAAAGCGGCACAGGGCGTGGTGGCAAGAGATATTGAGATCGCGGGTTGAA GAAAAGCTCGCCAAGCGCGTCTCCTCCCCTGCGAAGATGACTAGCCGGGT TGAGATGAGCACGTCTACCTCCGTGCTTTCGGAAAGCGAAGTGGTCATTG CTCTCGGGAGCCGAACCACGATCCTCCACCCTGAAATAAAGCGGCACAGG GCGTGGTGGCAAGAGATATTGAGATCGCGGGTTGAAGAAAAGCTCGCCAA GCGCGTCTCCTCCCCTGCGAAGGACTCTTCATCGCTGCTCGTGGACGGTC AGGGCCACGCCCACGTGCGTCTCCTGGAGAAAGTCGCGGTTTTGTTGTCG AGACAGGTCGAGGATGGGGTGTTCATCTCTCTCGGGGAGGCAGCGTCGGA CTCTTCATCGCTGCTCGTGGACGGTCAGGGCCACGCCCACGTGCGTCTCC TGGAGAAAGTCGCGGTTTTGTTGTCGAGACAGGTCGAGGATGGGGTGTTC ATCTCTCTCGGGGAGGCAGCGTCG back to top
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