prot_F-serratus_M_contig990.21212.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig990.21212.1
Unique Nameprot_F-serratus_M_contig990.21212.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length539
Homology
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BLAST of mRNA_F-serratus_M_contig990.21212.1 vs. uniprot
Match: D7G2F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 4.460e-63
Identity = 158/359 (44.01%), Postives = 199/359 (55.43%), Query Frame = 0 
Query:  191 MTDQDIKQLSEKYRKLPTGRRNPDEITVADPELAAAA-------------------AXXGEAAASAVLVEAVGSVG-VRVAAERAAAAAAGQVLIPEVPGIASVLHLELGVSKERVKRLVLKWPRLLEVSRDNLDQSVRWLLEALAVGRDDAARIVISHPPILIKSVERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFSLTNMAWKARYLAEETQMNAVDLRSVLRRCPSLFAYSVEKNLVPTLHFFWEELGATRMQXXXXXXXXXXXXXXXXXXXXXPRAQSMRAAGVTPSWHVHHTVIIFAGDDVFRRWLEDEARG 529
            M++++++QLS KY+ LP GRR PDEITVA PELAA                     +  G+ A        VG+VG VR AA++AAA AAG VLIPE P +ASVL+ +LGV KERVKRL+LKWPRLLEVS   + Q V+WL E + + +D  A++V++HPP+  K V                                                                      NFSL NMAWKAR+L EE  ++ ++++ V  RCPS+ AYS E+NLVPTL FF +ELGATR Q     XXXXXXXXXXXXXXXX R Q +R AG TPSW +HH V++FA D VF RWL +E  G
Sbjct:    1 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXPPSPGGQHAGG------VGAVGTVRDAADQAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCVQWLTETVGMTKDQVAKLVLAHPPMARKVV--------------------------CSCPQLLVKSVPSNFMPKIIFFERRLGIGRDGIGPMLVRYPQLFNFSLKNMAWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRQQVREAVXXXXXXXXXXXXXXXXXRLQIIRQAGFTPSWELHHRVMLFASDVVFGRWLREEPTG 327
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BLAST of mRNA_F-serratus_M_contig990.21212.1 vs. uniprot
Match: A0A6H5KP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP85_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.100e-29
Identity = 78/144 (54.17%), Postives = 95/144 (65.97%), Query Frame = 0 
Query:  176 DPTAVAHGYLRSFLEMTDQDIKQLSEKYRKLPTGRRNPDEITVADPELAA--------------------AAAXXGEAAASAVLVEAVGSVG-VRVAAERAAAAAAGQVLIPEVPGIASVLHLELGVSKERVKRLVLKWPRLLE 298
            DPTA AHG+L  FL+M++++++QLS KY+ LP GRR PDEITVA PELAA                    A +  GE A  A      G+VG VR AA++AAA AAG VLIPE P +ASVL+ +LGV KERVK L+LKWPRLLE
Sbjct:   32 DPTAAAHGFLTEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXAGAPSPGGEHAGGA------GAVGAVREAADQAAARAAGIVLIPETPALASVLYAQLGVPKERVKMLLLKWPRLLE 169
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2F0_ECTSI4.460e-6344.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP85_9PHAE2.100e-2954.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 360..392
e-value: 0.065
score: 22.4
coord: 433..465
e-value: 0.0011
score: 28.2
coord: 397..428
e-value: 220.0
score: 9.0
coord: 470..501
e-value: 3.9
score: 16.4
coord: 287..317
e-value: 120.0
score: 11.0
coord: 323..355
e-value: 0.025
score: 23.7
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 278..453
e-value: 1.6E-21
score: 76.6
coord: 431..503
e-value: 2.2E-6
score: 26.8
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 269..429
e-value: 3.2E-29
score: 103.9
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 376..432
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 433..496
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 275..385
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 275..385
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 433..496
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 376..432
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..538

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig990contigF-serratus_M_contig990:208168..253686 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig990.21212.1mRNA_F-serratus_M_contig990.21212.1Fucus serratus malemRNAF-serratus_M_contig990 207965..253699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig990.21212.1 ID=prot_F-serratus_M_contig990.21212.1|Name=mRNA_F-serratus_M_contig990.21212.1|organism=Fucus serratus male|type=polypeptide|length=539bp
MRPRYLCTMMLAGRAACSPTSEFPPAPTSFVWTYFEPPSRHLRPESLCRD
GWLRGGHHHCCGTSSRYNRYRDHRGRAAPSMVILKQESCATRSEDRWNRT
GVKTLPARAFLPQLCSQSSSADMRRRCLIMHAGRAMLGMPLGAFRGHPGP
PVAAAALETMPNADETPMASCDGENDPTAVAHGYLRSFLEMTDQDIKQLS
EKYRKLPTGRRNPDEITVADPELAAAAAAAGEAAASAVLVEAVGSVGVRV
AAERAAAAAAGQVLIPEVPGIASVLHLELGVSKERVKRLVLKWPRLLEVS
RDNLDQSVRWLLEALAVGRDDAARIVISHPPILIKSVERQLETNLRWLED
DLGLTRVQVRKVVCSCPQLLTKSWSSNLLPKLTFFEREMGLGRGQIKAML
LRYPQLLNFSLTNMAWKARYLAEETQMNAVDLRSVLRRCPSLFAYSVEKN
LVPTLHFFWEELGATRMQVRTAILKQPRLLGTSLEKRLLPRAQSMRAAGV
TPSWHVHHTVIIFAGDDVFRRWLEDEARGGDHLTSGTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf