prot_F-serratus_M_contig990.21204.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig990.21204.1
Unique Name	prot_F-serratus_M_contig990.21204.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	213

Homology

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BLAST of mRNA_F-serratus_M_contig990.21204.1 vs. uniprot
Match: A0A6H5KGY7_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.040e-60
Identity = 119/206 (57.77%), Postives = 135/206 (65.53%), Query Frame = 0

Query:    5 GASTREAATIGG--RSRRPRA-------GFFLILALIGTTCGSRGIGAQEDYDYGYGHPRHQPMRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKAQIEEEKKWEVTKKNDLATINQQFNQMEASLTASLNEKAMQARGLEQFLYSLPDINEDGLITRYEFDKYMNEYKRTHPGLTDRDLPRFEDMDHNNNGHINFNE 201
            G++TR A+T      SRRPR        GF+L+  L+GT+CG    G Q+DYDYG    +  PMRAGXXXXXX                             KA  +E KKW   KK DL  INQQFNQMEASLTASLNEK +Q++ LEQFLYSLPD N+DGLITR+EFDKYMNEYKR HPGLTD DLPRFEDMDHNNNGHINF+E
Sbjct:   13 GSTTRVASTPSSPASSRRPRVSRRPGGLGFWLVAILVGTSCGGA-RGQQDDYDYGGYAQQQAPMRAGXXXXXXGLMKPLAAVATSFVAMKLLFSHHRKRKGIKALEQERKKWVQMKKEDLQQINQQFNQMEASLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHE 217

[Close]

BLAST of mRNA_F-serratus_M_contig990.21204.1 vs. uniprot
Match: A0A7S2LGL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.970e-9
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 0

Query:  110 TKKNDLATINQQFNQMEASLTASLNEKAMQARGLEQFLYSLPDINEDGLITRYEFDKYMNEYKRTHPGLTDRDLPRFEDMDHNNNGHINFNEARRALSAATR 211
            T+  +LA + +Q      ++       A+Q R  ++F    PD++ D  I+R EF+ Y+  Y   +PGLT++D+P+FED DH+N+G ++F+E    ++  T+
Sbjct:  115 TQNAELAYLAEQLKTHARNVEEQAELDALQ-RDYDEF--KQPDVDGDDRISRAEFNHYVKNYLSNYPGLTEKDMPKFEDFDHDNDGSVSFSEYAEQMALQTK 213

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig990.21204.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig990.21204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KGY7_9PHAE	2.040e-60	57.77	EF-hand domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A7S2LGL3_9STRA	8.970e-9	32.35	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 82..211 e-value: 3.2E-9 score: 39.0
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 42..69
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 89..212
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 70..88
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..22
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 23..41
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..37 score: 0.562
None	No IPR available	TMHMM	TMhelix		coord: 67..89
None	No IPR available	TMHMM	TMhelix		coord: 21..43
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 152..164
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 152..174 score: 6.898
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 186..212 score: 8.962
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 145..208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig990	contig	F-serratus_M_contig990:43275..69897 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig990.21204.1	mRNA_F-serratus_M_contig990.21204.1	Fucus serratus male	mRNA	F-serratus_M_contig990 42463..70087 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig990.21204.1 ID=prot_F-serratus_M_contig990.21204.1|Name=mRNA_F-serratus_M_contig990.21204.1|organism=Fucus serratus male|type=polypeptide|length=213bp
MCHGGASTREAATIGGRSRRPRAGFFLILALIGTTCGSRGIGAQEDYDYG
YGHPRHQPMRAGGGGEGGGFMGPVAAAAGGFFAMKLLVSGRRKRKTRKAQ
IEEEKKWEVTKKNDLATINQQFNQMEASLTASLNEKAMQARGLEQFLYSL
PDINEDGLITRYEFDKYMNEYKRTHPGLTDRDLPRFEDMDHNNNGHINFN
EARRALSAATRD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair