prot_F-serratus_M_contig989.21163.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig989.21163.1
Unique Nameprot_F-serratus_M_contig989.21163.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length145
Homology
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S2R5B9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5B9_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.450e-45
Identity = 67/140 (47.86%), Postives = 102/140 (72.86%), Query Frame = 0
Query:    3 GVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            G+LF + FEV  +NP+GK FD++NRL  K  TY++++L+D+NC+++ V + D+++F LAS+L + G  DDGTY    D  +L D+YEY MHGRV+   H KD  +++  SFGGLL+RLTGD RH+ +IE+D  ++CL+ +
Sbjct:    4 GILFTETFEVVTVNPEGKVFDRINRLMAKAETYNMELLVDVNCELWQVNEHDKISFALASSLAIDGTADDGTYN-QDDGPSLLDQYEYAMHGRVYGFNHKKDDVIEIDVSFGGLLLRLTGDARHLTSIELDQNIYCLMNK 142          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: Q568H8_DANRE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=128 Tax=Gnathostomata TaxID=7776 RepID=Q568H8_DANRE)

HSP 1 Score: 150 bits (379), Expect = 6.130e-44
Identity = 71/149 (47.65%), Postives = 105/149 (70.47%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKD-----TKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQNA 144
            M+G+LFEDIF+V  ++PDGKKFD+V+RL C+  ++ +D++LD+N  IYPV  GD+   V+ASTL   G PDDG Y P  D  + AD+++YVM+G+V+R E  +      T++  + S+GGLLMRL GD  ++   EVDSRV+ L+++ A
Sbjct:    1 MAGILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKLA 149          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A1Q3C0J1_CEPFO (RNA_pol_Rpb8 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C0J1_CEPFO)

HSP 1 Score: 149 bits (375), Expect = 2.130e-43
Identity = 71/141 (50.35%), Postives = 101/141 (71.63%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFR--CEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            +LFEDIF V K++PDGKKFDKV+R+E K    D+ + LD+N +IYP+ QG++ T  LA TL+L G PD G Y   G   TLADKYEYVMHG++++   +  K +K +++ S+GGLLM L GDQ +++  E+D R+F L+R+
Sbjct:    5 MLFEDIFNVDKVDPDGKKFDKVSRIEAKSQNCDMFMQLDVNSEIYPMSQGEKFTMALARTLNLDGTPDTGFYT-QGHRKTLADKYEYVMHGKLYKISADEGKGSKAEIYVSYGGLLMMLKGDQNYISKFELDQRLFLLIRK 144          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A3B3ZM06_9GOBI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=7 Tax=Euteleostomi TaxID=117571 RepID=A0A3B3ZM06_9GOBI)

HSP 1 Score: 149 bits (376), Expect = 2.380e-43
Identity = 70/149 (46.98%), Postives = 105/149 (70.47%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKD-----TKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQNA 144
            M+G+LFEDIF+V  ++PDGKKFD+V+RL C+  ++ +D++LD+N  IYPV  GD+   V+ASTL   G PDDG Y P  D  + +D++EYVM+G+V++ E  +      T++  + S+GGLLMRL GD  ++   EVDSRV+ L+++ A
Sbjct:   11 MAGILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGEYNPQDDRPSRSDQFEYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKLA 159          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A0E0KLI4_ORYPU (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0KLI4_ORYPU)

HSP 1 Score: 148 bits (374), Expect = 3.310e-43
Identity = 75/148 (50.68%), Postives = 102/148 (68.92%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDT------KVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            M+  LFEDIF V +L+PDGKKFD+V+R+E +   +D+ + LD+  D+YP+  GDR T VL  TL+L G PD G +   G + TLADKYEYVMHG++++    KDT      KV+++ASFGGLLM L GD    AN E+D R+F L+R+
Sbjct:    1 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLNLDGTPDSGFFTQAGRK-TLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLMMLKGDPSSAANFELDQRLFLLMRK 147          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2R5B9_9STRA6.450e-4547.86DNA-directed RNA polymerases I, II, and III subuni... [more]
Q568H8_DANRE6.130e-4447.65DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1Q3C0J1_CEPFO2.130e-4350.35RNA_pol_Rpb8 domain-containing protein n=1 Tax=Cep... [more]
A0A3B3ZM06_9GOBI2.380e-4346.98DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A0E0KLI4_ORYPU3.310e-4350.68Uncharacterized protein n=2 Tax=Oryza TaxID=4527 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..142
e-value: 4.0E-55
score: 199.1
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..141
e-value: 1.8E-47
score: 161.1
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..144
e-value: 4.2E-47
score: 157.8
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
NoneNo IPR availableGENE3D2.40.50.140coord: 6..144
e-value: 3.5E-49
score: 168.3
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:95923..100565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21163.1mRNA_F-serratus_M_contig989.21163.1Fucus serratus malemRNAF-serratus_M_contig989 95923..101191 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig989.21163.1 ID=prot_F-serratus_M_contig989.21163.1|Name=mRNA_F-serratus_M_contig989.21163.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPV
KQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCE
HLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold