prot_F-serratus_M_contig989.21163.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig989.21163.1
Unique Nameprot_F-serratus_M_contig989.21163.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length145
Homology
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S2E8I0_TRICV (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8I0_TRICV)

HSP 1 Score: 161 bits (408), Expect = 2.130e-48
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDG-TYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIF V  LNPD K FD+VNR+   G T+D D+LLDINC+IY + +GD++T VLASTL+L G PDD  +Y P   E TLAD YEYVMHGRVF   +  +  + + ASFGGLLMRLTGDQRH+++++ D R++ L++++
Sbjct:    6 TLFEDIFLVKTLNPDRKVFDRVNRIAADGTTFDCDLLLDINCEIYNLTEGDKITLVLASTLNLDGTPDDHFSYAPNPGEPTLADNYEYVMHGRVFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSSVQPDMRLYVLIKKD 146          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: B8CGC8_THAPS (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CGC8_THAPS)

HSP 1 Score: 161 bits (408), Expect = 2.650e-48
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGT-YKPM---GDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFE+  LNP+GKKFD VNRL   G T++ D+LLD NC IY + +G+++T VLASTL+L G PDD T Y P     +E+TLAD YEYVMHGRVF   + KD  V +  SFGGLL RLTGDQRH++++  D R++ L++++
Sbjct:   10 TLFEDIFEITHLNPEGKKFDLVNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVLASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSSVLPDMRLYVLIKKD 153          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S2W3V0_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W3V0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.320e-48
Identity = 80/141 (56.74%), Postives = 107/141 (75.89%), Query Frame = 0
Query:    5 LFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVK-QGDRLTFVLASTLDLSGKPDDG-TYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
            LFEDIFE+  +N DGKKFD+VNR+   G T++ ++LLDINC+IY +K +G++ T VLASTL+L G+PDD  +Y P   E TLAD YEYVMHGRVF   + K+  V + ASFGGLLMRL G QRH++NI+ D R++ LL+++
Sbjct:    9 LFEDIFEITAINSDGKKFDRVNRIAATGTTFECELLLDINCEIYHLKDEGEKFTLVLASTLNLDGRPDDHLSYAPNPGEPTLADNYEYVMHGRVFDISYKKEGAVVIAASFGGLLMRLIGHQRHLSNIQPDMRLYVLLKKD 149          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.860e-48
Identity = 73/138 (52.90%), Postives = 106/138 (76.81%), Query Frame = 0
Query:    5 LFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            +FEDIFE+ +LNP+GKKF++V RL CKG++Y+++++LDIN +++P+K  ++ TF L STLDL GKPDDG +   G + TL D+Y+Y M+G+VF+ +H     V ++ASFGGLLM L GDQ H+ NI   SRV+CL+R+
Sbjct:    6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTG-KPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.390e-47
Identity = 78/142 (54.93%), Postives = 103/142 (72.54%), Query Frame = 0
Query:    2 SGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
            S  LFEDIFEV  LNP+ K F++VNRL   G T++ D+LLDINC+IY +++ DR+T VLA TL+L G PDD        E +LAD YEYVMHGRVF   + KD  + + ASFGGLLMRLTGDQRH++ I+ D R++ L++++
Sbjct:    9 SMTLFEDIFEVTALNPEKKIFERVNRLAATGTTFECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKKD 150          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: F0W6P2_9STRA (DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6P2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.710e-47
Identity = 76/142 (53.52%), Postives = 105/142 (73.94%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            M+  LFEDIFEV +LNP+GK FDKV R+  KG++Y++++ LDIN +++ +K+ D+ TF L  TLDL GKPDDG Y   G + TL D+Y+Y M+G++F  EH     V ++ASFGGLLMRL G+QRH+  +  DSRV+CLLR+
Sbjct:   84 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSG-KATLLDRYDYGMYGKIFHYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A1Z5K7U1_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7U1_FISSO)

HSP 1 Score: 155 bits (393), Expect = 4.450e-46
Identity = 77/141 (54.61%), Postives = 99/141 (70.21%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKP-DDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFEV  LNPDG KFD+VNR++  G T++ ++LLDINC+IY + +G++ T VLASTL L G P D   Y P   E  L+D YEYVMHGRVF     KD  V +  S+GGLLMRL GD RH+ +I+ D R+F LL+++
Sbjct:    9 TLFEDIFEVNALNPDGYKFDRVNRIQAIGTTFECELLLDINCEIYSLLEGEKFTAVLASTLHLDGSPADHSCYMPNTTEPDLSDNYEYVMHGRVFDMAFKKDGTVSISISYGGLLMRLVGDARHLTSIQPDQRLFLLLKKD 149          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: B7G7Y8_PHATC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Y8_PHATC)

HSP 1 Score: 155 bits (391), Expect = 8.950e-46
Identity = 77/142 (54.23%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDG-TYKPMGD-EITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFE+  LNPDG KF++VNR++  G T++ ++LLDINC+IY +++ D+ T VLASTL L G P D  +Y P    E +LAD YEYVMHGRVF   + KD  V +  S+GGLLMRLTGDQRH+++I  D R++ LL+++
Sbjct:    8 TLFEDIFEITALNPDGYKFERVNRIQATGTTFECELLLDINCEIYTLRETDKFTLVLASTLHLDGSPADHFSYVPANSAEPSLADNYEYVMHGRVFDMSYQKDGTVVIAISYGGLLMRLTGDQRHLSSILPDQRLYLLLKKD 149          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S1CMR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMR6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.340e-45
Identity = 71/141 (50.35%), Postives = 104/141 (73.76%), Query Frame = 0
Query:    2 SGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            S  LF DIF V  +NPDGKKFD+V+RL CKG T+DV + +D+  +++PVK G++L   + STL L G+PDDGTY+    E +L D+Y+Y MHGRVF+ ++ +D +V ++ASFGGLLM L G Q  ++++ +D RV+CL+R+
Sbjct:    5 SATLFHDIFTVDDVNPDGKKFDRVSRLVCKGETWDVLLKIDVASEVFPVKAGEKLAVAVVSTLRLDGEPDDGTYQHNEGEESLLDQYDYGMHGRVFKYDYEEDDRVSVYASFGGLLMLLHGQQDSLSSLSLDQRVYCLIRR 145          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S2YA89_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YA89_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.920e-45
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDG----TYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFE+  LNPDG KFD+VNRL+  G T++ D+LLDIN +IY + + DR T VLASTL L G P D     T    G E TLAD YEYVMHGRVF  ++ KD  V L  S+GGLLMRLTGD++H+  I  D R++ LL+++
Sbjct:    8 TLFEDIFEITALNPDGFKFDRVNRLQATGTTFECDLLLDINSEIYHLMENDRFTLVLASTLHLDGSPADHLSYVTTAHTGSEPTLADNYEYVMHGRVFDIKYQKDGTVVLAFSYGGLLMRLTGDKKHLNAIRPDQRLYLLLKKD 151          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2E8I0_TRICV2.130e-4856.03DNA-directed RNA polymerases I, II, and III subuni... [more]
B8CGC8_THAPS2.650e-4855.56DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2W3V0_9STRA3.320e-4856.74DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024TMY4_9STRA7.860e-4852.90DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0CGW6_9STRA1.390e-4754.93DNA-directed RNA polymerases I, II, and III subuni... [more]
F0W6P2_9STRA4.710e-4753.52DNAdirected RNA polymerase I putative n=3 Tax=Albu... [more]
A0A1Z5K7U1_FISSO4.450e-4654.61DNA-directed RNA polymerases I, II, and III subuni... [more]
B7G7Y8_PHATC8.950e-4654.23DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1CMR6_9STRA1.340e-4550.35Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2YA89_9STRA1.920e-4555.56DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..142
e-value: 4.0E-55
score: 199.1
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..141
e-value: 1.8E-47
score: 161.1
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..144
e-value: 4.2E-47
score: 157.8
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
NoneNo IPR availableGENE3D2.40.50.140coord: 6..144
e-value: 3.5E-49
score: 168.3
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:95923..100565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21163.1mRNA_F-serratus_M_contig989.21163.1Fucus serratus malemRNAF-serratus_M_contig989 95923..101191 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig989.21163.1 ID=prot_F-serratus_M_contig989.21163.1|Name=mRNA_F-serratus_M_contig989.21163.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPV
KQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCE
HLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold