prot_F-serratus_M_contig989.21163.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig989.21163.1
Unique Nameprot_F-serratus_M_contig989.21163.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length145
Homology
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 4.490e-91
Identity = 126/144 (87.50%), Postives = 140/144 (97.22%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQNA 144
            MSGVLFEDIFEVGKLNPDGKKFD+VNRLECKG+TYD+D+LLD NCDIYPVK+G+RLTFV+ASTLDLSGKPDDGTYKP+GDE++LADKYEYVMHGRV+R +  KDTKVQ+FASFGGLLMRLTGDQRHVANIEVDSRVFCLLR+NA
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRNA 144          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 195 bits (496), Expect = 9.300e-62
Identity = 89/142 (62.68%), Postives = 118/142 (83.10%), Query Frame = 0
Query:    2 SGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
            +G+LFED+F+V +LNP GKKFD+VNRL CK +T+++D+LLDIN +IY V+Q D+L+ VL+STL L G PDDGTY+P+  E TLA +YEYVMHGRVF+ E L  T+VQ+ ASFGGLLMRLTG+QRH+ +I +D R++ L+RQN
Sbjct:    4 TGILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQN 145          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.530e-52
Identity = 83/141 (58.87%), Postives = 108/141 (76.60%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDG-TYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFEV  LNP+GKKF++VNRL   G T++ D+LLDINC+IY V +GD++T VLASTL L G PDD  +++P   E TLAD Y+YVMHGR+F   + KD  V + ASFGGLLMRLTGDQRH++N+  D R++ LL+++
Sbjct:    8 TLFEDIFEVTALNPEGKKFERVNRLAATGTTFECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDHFSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKKD 148          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S1GJQ4_CYCTE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ4_CYCTE)

HSP 1 Score: 168 bits (426), Expect = 4.570e-51
Identity = 83/141 (58.87%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDG-TYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFEV  LNPDGKKF++VNRL   G T++ D+LLD+NC+IY VK GD++T VLASTL L G P D  ++ P   E TLAD YEYVMHGR+F   + KD  V + AS+GGLLMRLTGDQRH++ +  D R+F LL+++
Sbjct:   11 TLFEDIFEVTALNPDGKKFERVNRLAATGTTFECDLLLDLNCEIYNVKDGDKITLVLASTLHLDGSPADHFSFDPNATEPTLADNYEYVMHGRIFDVSYKKDGIVVISASYGGLLMRLTGDQRHLSQVLPDMRLFLLLKKD 151          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 167 bits (424), Expect = 6.930e-51
Identity = 78/142 (54.93%), Postives = 109/142 (76.76%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            M+  LFEDIFEV ++NPDGKKFDKV R+ CKG++Y++++ LDIN ++Y ++Q ++ TF L STLDL GKPDDGTY   G + TL D+Y+Y M+G+VF+ +H     V ++ASFGGLLM L G+QRH+  I  D+R++CLLR+
Sbjct:    1 MASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSG-KPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC)

HSP 1 Score: 165 bits (418), Expect = 7.520e-50
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGT-YKPMG---DEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFE+  LNP+GKKF++VNRL  KG T+D D+LLD NC IY + + +++T VLASTL+L G PDD T Y P     +E TLAD YEYVMHGRVF   + KD  V +  SFGGLL RLTGDQRH++NI  D R+F L++++
Sbjct:    8 TLFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKKD 151          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A1E7FPE4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPE4_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.900e-49
Identity = 81/140 (57.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFEV  LNPDG KFD+VNR++  G T++ D+LLDINC+IY +++ D++T VLASTL L G P D        E TLAD YEYVMHGRVF   + KD    L  SFGGLLMRLTGDQRH+AN+  D R++ LL+++
Sbjct:    8 TLFEDIFEVTALNPDGYKFDRVNRIQAVGTTFECDLLLDINCEIYNLREADKVTLVLASTLHLDGSPADHLSYSPSTEPTLADNYEYVMHGRVFDISYKKDGTAVLALSFGGLLMRLTGDQRHLANVLPDMRLYLLLKKD 147          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.510e-49
Identity = 77/142 (54.23%), Postives = 108/142 (76.06%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQ 142
            M+  LFEDIFEV +LNP+GKKFDKV R+  KG++Y++++ LDIN +++ +K+ D+ TF L STLDL GKPDDG Y   G + TL D+Y+Y M+G++F+ EH     V ++ASFGGLLMRL G+QRH+  +  DSR++CLLR+
Sbjct:   37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSG-KATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.930e-49
Identity = 75/140 (53.57%), Postives = 103/140 (73.57%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIF V +LNPDGKKF ++NR++  G T+  D+LLD N +IYP+ + +++T VL+STL L G+PDDG Y   G E T+AD YEYVMHGRVF  ++  D  + +  SFGGLLMRLTGDQRH+ N+  D R++ L++++
Sbjct:    6 TLFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSG-EPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKKD 144          
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Match: A0A7R9WD29_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD29_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.550e-48
Identity = 77/141 (54.61%), Postives = 106/141 (75.18%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPVKQGDRLTFVLASTLDLSGKPDDG-TYKPMGDEITLADKYEYVMHGRVFRCEHLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQN 143
             LFEDIFEV  LNPD K FD+VNR+   G T++ D+LLD+NC+IY +++ +++TFVLASTL+L G PDD  +Y P   E TLAD YEYVMHGR+F   +  +  + + ASFGGLLMRLTGDQRH++ I+ D R++ L++++
Sbjct:    7 TLFEDIFEVTTLNPDRKVFDRVNRIAATGTTFECDLLLDVNCEIYDLRESNKITFVLASTLNLDGTPDDHFSYAPNPGEPTLADNYEYVMHGRIFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSQIQPDMRLYVLIKKD 147          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI4.490e-9187.50DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA9.300e-6262.68DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA2.530e-5258.87DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1GJQ4_CYCTE4.570e-5158.87DNA-directed RNA polymerases I, II, and III subuni... [more]
K3X3H5_GLOUD6.930e-5154.93DNA-directed RNA polymerases I, II, and III subuni... [more]
K0RE90_THAOC7.520e-5057.64DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1E7FPE4_9STRA1.900e-4957.86DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA3.510e-4954.23Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A7S1BC37_9STRA4.930e-4953.57DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WD29_9STRA1.550e-4854.61DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..142
e-value: 4.0E-55
score: 199.1
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..141
e-value: 1.8E-47
score: 161.1
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..144
e-value: 4.2E-47
score: 157.8
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
NoneNo IPR availableGENE3D2.40.50.140coord: 6..144
e-value: 3.5E-49
score: 168.3
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:95923..100565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21163.1mRNA_F-serratus_M_contig989.21163.1Fucus serratus malemRNAF-serratus_M_contig989 95923..101191 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig989.21163.1 ID=prot_F-serratus_M_contig989.21163.1|Name=mRNA_F-serratus_M_contig989.21163.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MSGVLFEDIFEVGKLNPDGKKFDKVNRLECKGLTYDVDILLDINCDIYPV
KQGDRLTFVLASTLDLSGKPDDGTYKPMGDEITLADKYEYVMHGRVFRCE
HLKDTKVQLFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRQNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold