prot_F-serratus_M_contig981.21123.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig981.21123.1
Unique Nameprot_F-serratus_M_contig981.21123.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length361
Homology
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BLAST of mRNA_F-serratus_M_contig981.21123.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.560e-20
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0 
Query:    1 MAHFEDCKFFRRKSCFNGPNCMFRHNELACLTVEVCRRWASGYVCDGRCNLRHPSVAELAAM 62
            MAHFEDCKF+R+++C NG +C FRHNE +  T  +C RWA+GY CDGRCNLRHPS AE+AA+
Sbjct:    1 MAHFEDCKFYRQRACLNGVHCGFRHNEASRHTERLCNRWAAGYTCDGRCNLRHPSAAEIAAL 62
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig981.21123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Y8_9PHAE1.560e-2066.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 31..55
e-value: 21.0
score: 5.7
coord: 3..27
e-value: 0.46
score: 18.9
coord: 81..106
e-value: 1.1E-4
score: 31.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 80..107
score: 16.061
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 1..28
score: 12.296
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 31..56
score: 7.348
IPR041686Zinc-finger CCCH domainPFAMPF15663zf-CCCH_3coord: 3..57
e-value: 1.5E-7
score: 31.6
NoneNo IPR availablePFAMPF18345zf_CCCH_4coord: 86..104
e-value: 1.9E-7
score: 30.9
NoneNo IPR availableGENE3D4.10.1000.10coord: 70..124
e-value: 5.2E-8
score: 34.7
NoneNo IPR availableGENE3D4.10.1000.10coord: 3..66
e-value: 1.3E-5
score: 27.1
NoneNo IPR availablePANTHERPTHR15725ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAININGcoord: 3..157
NoneNo IPR availablePANTHERPTHR15725:SF0ZINC FINGER CCCH-TYPE-CONTAINING 11Acoord: 3..157
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 83..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig981contigF-serratus_M_contig981:171627..183146 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig981.21123.1mRNA_F-serratus_M_contig981.21123.1Fucus serratus malemRNAF-serratus_M_contig981 171542..183944 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig981.21123.1 ID=prot_F-serratus_M_contig981.21123.1|Name=mRNA_F-serratus_M_contig981.21123.1|organism=Fucus serratus male|type=polypeptide|length=361bp
MAHFEDCKFFRRKSCFNGPNCMFRHNELACLTVEVCRRWASGYVCDGRCN
LRHPSVAELAAMEATAFKPQIATLRSASTTASAPVCKFYQQGRCTKGSSC
LFSHEMPRQKEQPAWDESATATVAPPRPERKLPPLTLRTAAAKARAAASS
TNAEADAEQATAAVEKGDGASRETGTMKTDVKAKAVEILERHRLSKRARV
LEAGRPKTNDAPPTRQRSLQGSVAAPSVGRGAAGVSTESVDRPERTKRQR
SPERGSASEETEEVRGMPTESADLQGTTKRQMYQDNDDAKTGVKTLGDSA
RNSGQSFSTACPEGDRVKVSCSEMASGIDGQGDVATSATTSSPTHSPPSP
HSVPPATIST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR041686Znf-CCCH_3
IPR036855Znf_CCCH_sf