prot_F-serratus_M_contig98.21112.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig98.21112.1
Unique Name	prot_F-serratus_M_contig98.21112.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	211

Homology

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 7.460e-112
Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 0

Query:    1 MKMDVGTVFFCSLSAATAFVSPSAFTGSQIARVQGTNSAA-TRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            MKM++G +   +L+  TAFV+PSAF GSQIAR Q   SA  T+MAV DMLGADVET GVFDPLG+GK+D  LFRRR VELKHGRVAMLAVTG L A+QWHPLYDGKLSPGLKALGELPLAAW+QIL  IA +ELTVGKQDYENKAPGELG+FGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIM E+VQEK+TGQT IEQL SG+++PF
Sbjct:    1 MKMEIGALAL-TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPF 209

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 241 bits (614), Expect = 9.990e-78
Identity = 123/202 (60.89%), Postives = 160/202 (79.21%), Query Frame = 0

Query:    8 VFFCSLSAATAFVSPSAFTGSQIARVQGTNSAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            VF   ++AA+AFV  +   G  + ++Q  +  A RMAV+DM+GADVET+GV+DPLGF K++  L+R R VELKHGRVAMLAV G  VA+ WHPLYDGK+ PGLKA+ ++P A W+QILA IAAIEL++GKQD+EN+APG+LG FG   NP+ ++PV F+KLQLKE+KNGRLAM+AI   LVQE +TGQTT++QL  G+I+PF
Sbjct:    6 VFAALIAAASAFVPSAPLRG--LDKLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLG-FGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPF 202

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.570e-76
Identity = 119/198 (60.10%), Postives = 155/198 (78.28%), Query Frame = 0

Query:   12 SLSAATAFVSPSAFTGSQIARVQGTNSAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            SL+ A AF    AF G+++A  + ++ A   M+V D+LGADVETKGV+DPLGF K++  LFRRRVVELKHGR+ MLA  G LVA+ +HPLYDGK+  GL A+ ++P+A W+QI+A I  +ELTVGKQD+ENKAPG+LG FG  +NP+P++P  F+ LQLKELKNGRLAM+ IM  +VQE +TGQT + QLASG+I+PF
Sbjct:   11 SLAGAAAFAP--AFMGAKVAAPRVSSKAVVSMSVNDLLGADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLG-FGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLASGHISPF 205

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.900e-70
Identity = 121/207 (58.45%), Postives = 155/207 (74.88%), Query Frame = 0

Query:    3 MDVGTVFFCSLSAATAFVSPSAFTGSQIARVQGTNSAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            M    V   SL+ A+AFV P+A    +++R +G     TRMAV D+LG+DVET GV+DPL F K++  L+R R VELKHGR+AMLAV G  V++ +HPLYDGK+SPG+KA+GELP  AW+QILA I  IELTVGKQD ENKAPG+LG FG  +NP+ ++P  F++LQLKELKNGRLAML     L+QE ITGQT  EQ+A+ +++PF
Sbjct:    1 MKSAMVLVGSLAVASAFV-PAA---PKMSRTRGM----TRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPF 198

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.840e-59
Identity = 98/167 (58.68%), Postives = 127/167 (76.05%), Query Frame = 0

Query:   44 AVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQ-WHPLYDGKLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            AV  ++GADVET G +DPLG  KN++ L RRR VELKHGRVAMLAV GN+V    +HPL+DGK+  G+ A+ ++P A W+QIL  IAAIEL  G  D E+K PG++  FG A+   P++PV + KLQL+ELK+GRLAM+AI+ ELVQE+ITGQT ++QL  GN+NPF
Sbjct:   36 AVDALVGADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAF--IPEDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQLVEGNVNPF 199

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.120e-53
Identity = 112/211 (53.08%), Postives = 134/211 (63.51%), Query Frame = 0

Query:    5 VGTVFFCSLSAATAFVSPSAFTGSQIARVQGTNSAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPG------LKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            V  V   SL+   AF  PSAF G  +AR      A TRM+V+DM+G DVET G+FDPLGF K++  LFRRR VELKHGR+ MLA  G LV    H L D   S        L+ L + P+AA IQIL  I  +ELT G QDY NKAPG+LG FG A+ P  D+    ++LQLKELKNGRLAM+ IM  LVQE +T Q  IEQL  G+ +PF
Sbjct:    4 VACVAVASLAGVAAFT-PSAFAGKALARPAARTHAVTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 169 bits (427), Expect = 2.540e-49
Identity = 99/179 (55.31%), Postives = 121/179 (67.60%), Query Frame = 0

Query:   38 SAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDG------KLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPFN 210
            S   +M+V++M+GADVET GVFDPL F +++  LFRRR VELKHGR+AMLA  G  V      L D        LS   K L E P AA  QI+A IAAIEL  G+QDYENKAPG+LG FG ++     +P  F K QL+ELKNGRLAM+ IM  +VQE +TGQ+  EQ+ SGNINPF+
Sbjct:   39 STTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKN--SDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPFS 214

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.130e-48
Identity = 96/179 (53.63%), Postives = 124/179 (69.27%), Query Frame = 0

Query:   36 TNSAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPG-LKALGEL----PLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            T   + RMAV +M+G+DVET GVFDPLG  K++  L+R R++ELKHGRVAMLA  G LV   +H   +   +P  L AL ++    P+A W QI   I AIELT+GKQD  N+APG++G FG A+   PD+   F+ LQLKELKNGRLAM+AI+ + VQEK+TGQ  IEQL  G+ +PF
Sbjct:   25 TRGRSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.270e-47
Identity = 93/177 (52.54%), Postives = 119/177 (67.23%), Query Frame = 0

Query:   38 SAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWH---PLYDGK--LSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            +A TRMAV+DMLGAD+ET GV+DPL   K+D  LF+ R VELKHGRVAMLA  G LV    H   P++     L+   + L E P+A W QI   + A EL++GKQDYENKAPG++  FG    P  ++   + K+QL+ELKNGRLAM+A +   VQE +TGQ  IEQL  G+I+PF
Sbjct:    8 AAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181

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BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.830e-45
Identity = 104/215 (48.37%), Postives = 137/215 (63.72%), Query Frame = 0

Query:    1 MKMDVGTVFFCSLSAATAFVSPSAFTGSQIARVQGTNSAATRMAVKDMLGADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHPLYDGKLSPGLK---ALGELPLA---AWIQILAFIAAIELTVGKQDYENKAPGELGDFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQLASGNINPF 209
            M+  +  +  C ++ A+AFV+PS+F GS + +V  T+S + +M+V +++GAD ET GV+DP GF K+D  L++ R VELKHGRVAMLA  G LV Q +  L D   + G K   A  EL  +   A  QI     AIEL V KQD E  A G+LG FG     YPD    F  LQLKELKNGRLAM+AI+   VQEK+TGQ  IEQ+ +G+++PF
Sbjct:    1 MQTTIAVLLAC-VAGASAFVAPSSFAGSAL-KVASTSSTSLKMSVDELIGADTETSGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLV-QSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPA-GDLG-FGA----YPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPF 206

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig98.21112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPU8_ECTSI	7.460e-112	79.05	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A0G4EVU7_VITBC	9.990e-78	60.89	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A835ZQ88_9STRA	2.570e-76	60.10	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
W7TFG9_9STRA	6.900e-70	58.45	Light harvesting complex protein n=2 Tax=Monodopsi...	[more]
A0A7R9U311_9STRA	2.840e-59	58.68	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A835ZAI4_9STRA	1.120e-53	53.08	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0G4GDB0_VITBC	2.540e-49	55.31	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
W7U405_9STRA	1.130e-48	53.63	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A835ZIK7_9STRA	4.270e-47	52.54	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A835ZDP1_9STRA	5.830e-45	48.37	Light harvesting complex protein n=2 Tax=Tribonema...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 39..210 e-value: 6.7E-32 score: 112.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..190 e-value: 3.7E-27 score: 95.8
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 15..195
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 15..195
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..210
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.583
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 53..209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig98	contig	F-serratus_M_contig98:734056..739901 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig98.21112.1	mRNA_F-serratus_M_contig98.21112.1	Fucus serratus male	mRNA	F-serratus_M_contig98 733959..740788 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig98.21112.1 ID=prot_F-serratus_M_contig98.21112.1|Name=mRNA_F-serratus_M_contig98.21112.1|organism=Fucus serratus male|type=polypeptide|length=211bp
MKMDVGTVFFCSLSAATAFVSPSAFTGSQIARVQGTNSAATRMAVKDMLG
ADVETKGVFDPLGFGKNDDLLFRRRVVELKHGRVAMLAVTGNLVAQQWHP
LYDGKLSPGLKALGELPLAAWIQILAFIAAIELTVGKQDYENKAPGELGD
FGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMAELVQEKITGQTTIEQ
LASGNINPFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln