prot_F-serratus_M_contig970.21042.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig970.21042.1
Unique Nameprot_F-serratus_M_contig970.21042.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length103
Homology
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KGD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.600e-13
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    8 QAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 95
            +A  DPCVFRKVVDGE   ++V+ VDDIL  A D+   +     +  KF +KD+G+  +Y GC I  + +    KL Q  Y+ES++K+
Sbjct:  297 RALVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKR 383          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.200e-13
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0
Query:    5 GFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 95
            G+ Q + DPCVFRKVVDGE   ++V+ VDDIL  A D+   +     +  KF +KD+ +  +Y GC I  + +    KL Q  Y+ES++++
Sbjct:  454 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVTA-DEGEREELFASLNKKFPVKDLEECTWYDGCAIAMDVENGLTKLSQTAYIESMLRR 543          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.480e-13
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    5 GFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 95
            G+ Q + DPCVFRKVVDGE   ++V+ VDDIL  A D+   +     +  K  +KD+G+   Y GC I  + +    KL Q  Y+ES++K+
Sbjct:  396 GYEQYRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGGREELFASLNKKSPVKDLGECTLYDGCAIAMDVENGITKLSQTAYIESMLKR 485          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5L6D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.480e-13
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0
Query:   12 DPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 95
            DPCV RKVVDGE   ++V+ VDDIL  A D+   +     +  KF +KD+G+  +Y GC I  + +    KL Q  Y+ES++K+
Sbjct:   39 DPCVLRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKR 121          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-12
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 0
Query:    5 GFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIV 93
            G+ Q + DPC+FRKVVDGE   ++V+ VDDI+  A ++   +  A+ +  +F +KD+GD  +Y GC I  + +    KL Q  Y+ES++
Sbjct:   74 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESML 161          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGD1_9PHAE5.600e-1342.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEM4_9PHAE6.200e-1339.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAM7_9PHAE8.480e-1340.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6D0_9PHAE9.480e-1341.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE1.040e-1239.33Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..96
e-value: 8.7E-14
score: 51.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig970contigF-serratus_M_contig970:321606..321914 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig970.21042.1mRNA_F-serratus_M_contig970.21042.1Fucus serratus malemRNAF-serratus_M_contig970 321282..322146 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig970.21042.1 ID=prot_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFAT
EVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKKVRRQE
GN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2