prot_F-serratus_M_contig97.21034.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig97.21034.1
Unique Nameprot_F-serratus_M_contig97.21034.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length430
Homology
BLAST of mRNA_F-serratus_M_contig97.21034.1 vs. uniprot
Match: A0A1S3TW74_VIGRR (omega-3 fatty acid desaturase, chloroplastic n=7 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3TW74_VIGRR)

HSP 1 Score: 474 bits (1220), Expect = 1.590e-162
Identity = 216/350 (61.71%), Postives = 270/350 (77.14%), Query Frame = 0
Query:   80 FDYGAKPPFSLMDIRRAIPNECFDKSPLRSLSYLARDIVAVVGLAAGALAISSPLVWPLYWFAQGTMFWALFVVGHDCGHGSFSNNNRLNNIVGHLTHSFILVPYHGWRISHRTHHANHGHIDNDESWTPPTQSMVKDMDFGARMGRFNHWVMLVVYPFYLWLRSPGKKGSHFDPKSPLFVPSEKDDVLTSSACYAAMVALLAAATFKFGFLFVAKMYLVPYLINIMWLDLVTYLHHTDKE--VPWFRGSAWSYMRGALSTRDHDYGIFNNIHHDIGTHVVHHLFPQMPHYHIVEATKAVKPILGEYFVEPEKSGPIPFHLMKRFFKGAKECIYVEDEGEVVYYKSDDSV 427
            FD GA PPF+L +IR AIP  C+ K P +S+SY+ARD++ V+GLAAGA  +++ LVWPLYW AQGTMFWALFV+GHDCGHGSFSNN  LN++VGHL HS ILVPYHGWRISHRTHH NHGH++NDESW P ++ + + +D   RM RF     L+ YP YLW RSPGK GSHFDP S LF+P+E+ DVLTS+AC+AAM+ LL    F  G + + K+Y VPY++ +MWLDLVTYLHH   E  +PW+RG  WSY+RG L+T D DYG  NNIHHDIGTHV+HHLFPQ+PHYH+VEAT+A KP+ GEY+ EP+KSGP+PFHL+    +  K   +V D G+VVYY++D  +
Sbjct:   98 FDPGAAPPFNLAEIRAAIPKHCWVKDPWKSMSYVARDVIVVLGLAAGAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPNLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSERVFRSLDTATRMLRFTVPFPLLAYPVYLWQRSPGKTGSHFDPSSDLFLPNERKDVLTSTACWAAMLGLLVGLGFVIGPIQLLKLYGVPYMLFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWLNNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGEYYREPKKSGPLPFHLIGDLIRSLKTDHFVSDTGDVVYYQTDSEI 447          
BLAST of mRNA_F-serratus_M_contig97.21034.1 vs. uniprot
Match: A0A2I4GED7_JUGRE (omega-3 fatty acid desaturase, chloroplastic-like isoform X1 n=6 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GED7_JUGRE)

HSP 1 Score: 474 bits (1219), Expect = 2.330e-162
Identity = 219/357 (61.34%), Postives = 270/357 (75.63%), Query Frame = 0
Query:   74 LADEALFDYGAKPPFSLMDIRRAIPNECFDKSPLRSLSYLARDIVAVVGLAAGALAISSPLVWPLYWFAQGTMFWALFVVGHDCGHGSFSNNNRLNNIVGHLTHSFILVPYHGWRISHRTHHANHGHIDNDESWTPPTQSMVKDMDFGARMGRFNHWVMLVVYPFYLWLRSPGKKGSHFDPKSPLFVPSEKDDVLTSSACYAAMVALLAAATFKFGFLFVAKMYLVPYLINIMWLDLVTYLHHT--DKEVPWFRGSAWSYMRGALSTRDHDYGIFNNIHHDIGTHVVHHLFPQMPHYHIVEATKAVKPILGEYFVEPEKSGPIPFHLMKRFFKGAKECIYVEDEGEVVYYKSDDSVF 428
            L DE  FD G+ PPF L DIR AIP  C+ K P RS+SY+ RD+V V GLAA A   +   VWPLYW AQGTMFWALFV+GHDCGHGSFSNN  LNN+VGHL HS ILVPYHGWRISHRTHH NHGH++NDESW P ++ + K++D   R  RF     ++ YPFYLW RSPGKKGSHF P S LFVP+E+ DV+TS+AC+ AM ALL   +F  G L + K+Y +PY I +MWLDLVTYLHH   ++++PW+RG  WSY+RG L+T D DYGI NNIHHDIGTHV+HHLFPQ+PHYH+VEAT+A KP+L +Y  EP+KSGP+PFHL+    +  K+  YV + G+VVYY++D  ++
Sbjct:   90 LEDEGEFDPGSPPPFRLADIRAAIPKHCWVKDPWRSMSYVVRDVVVVFGLAAVAAYFNHWAVWPLYWIAQGTMFWALFVLGHDCGHGSFSNNPNLNNVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDNVTRTLRFTFPFPMLAYPFYLWGRSPGKKGSHFHPNSDLFVPNERKDVITSTACWTAMAALLGYLSFAMGPLQMLKLYFIPYWIFVMWLDLVTYLHHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGIINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLRKYRREPKKSGPLPFHLVGTLIRSMKQDHYVSETGDVVYYQTDPQLY 446          
BLAST of mRNA_F-serratus_M_contig97.21034.1 vs. uniprot
Match: A0A218XQE9_PUNGR (omega-3 fatty acid desaturase, chloroplastic-like n=3 Tax=Punica granatum TaxID=22663 RepID=A0A218XQE9_PUNGR)

HSP 1 Score: 473 bits (1216), Expect = 2.810e-162
Identity = 224/394 (56.85%), Postives = 278/394 (70.56%), Query Frame = 0
Query:   43 ISGKQGAKRPYDRKLSVSSAVSVPITEPKQALA------DEALFDYGAKPPFSLMDIRRAIPNECFDKSPLRSLSYLARDIVAVVGLAAGALAISSPLVWPLYWFAQGTMFWALFVVGHDCGHGSFSNNNRLNNIVGHLTHSFILVPYHGWRISHRTHHANHGHIDNDESWTPPTQSMVKDMDFGARMGRFNHWVMLVVYPFYLWLRSPGKKGSHFDPKSPLFVPSEKDDVLTSSACYAAMVALLAAATFKFGFLFVAKMYLVPYLINIMWLDLVTYLHHT--DKEVPWFRGSAWSYMRGALSTRDHDYGIFNNIHHDIGTHVVHHLFPQMPHYHIVEATKAVKPILGEYFVEPEKSGPIPFHLMKRFFKGAKECIYVEDEGEVVYYKSDDSVF 428
            +S K     P   + S +  VS P+  P   LA      +   FD GA PPF L DIR AIP  C+ K P RS  Y+ RD+  V G+AA A  +++  VWPLYWFAQGTMFWALFV+GHDCGHGSFSNN +LN+ VGHL HS ILVPYHGWRISHRTHH NHGH++NDESW P  + + K +D   R+ RF     +  YP YLW RSPGKKGSHFDP S LF  +E+ D++TS+AC+AAMVALL   +F  G + + K+Y VPY + + WLD+VTYLHH   D ++PW+RG  WSY+RG L+T D DYG  NNIHHDIGTHV+HHLFPQ+PHYH++EAT+A KP+LG+Y+ EP+KSGP+PFHL+    K  KE  YV D G+VVYY+ D  +F
Sbjct:   31 VSLKHSLSSPLRMRTSWALNVSAPLHSPPMELAGGGGEGEGEFFDPGAPPPFKLSDIRDAIPKHCWVKDPWRSTLYVVRDVAVVFGMAAAAAYLNNWAVWPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSFVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKLYKSLDTATRLLRFTLPFPMFAYPIYLWGRSPGKKGSHFDPNSDLFGRNERKDIITSTACWAAMVALLGYLSFVMGPIQLLKLYGVPYWLFVAWLDVVTYLHHHGHDDKLPWYRGQEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYKEPKKSGPLPFHLLGVLLKSMKEDHYVSDSGDVVYYQRDPQLF 424          
BLAST of mRNA_F-serratus_M_contig97.21034.1 vs. uniprot
Match: Q0KIX7_EUSER (Omega-3-desaturase (Fragment) n=1 Tax=Eustoma exaltatum subsp. russellianum TaxID=52518 RepID=Q0KIX7_EUSER)

HSP 1 Score: 473 bits (1216), Expect = 3.230e-162
Identity = 215/375 (57.33%), Postives = 278/375 (74.13%), Query Frame = 0
Query:   57 LSVSSAVSVPITEPKQALAD-----EALFDYGAKPPFSLMDIRRAIPNECFDKSPLRSLSYLARDIVAVVGLAAGALAISSPLVWPLYWFAQGTMFWALFVVGHDCGHGSFSNNNRLNNIVGHLTHSFILVPYHGWRISHRTHHANHGHIDNDESWTPPTQSMVKDMDFGARMGRFNHWVMLVVYPFYLWLRSPGKKGSHFDPKSPLFVPSEKDDVLTSSACYAAMVALLAAATFKFGFLFVAKMYLVPYLINIMWLDLVTYLHHTDKE--VPWFRGSAWSYMRGALSTRDHDYGIFNNIHHDIGTHVVHHLFPQMPHYHIVEATKAVKPILGEYFVEPEKSGPIPFHLMKRFFKGAKECIYVEDEGEVVYYKSD 424
            L VS+ V + + E  +         E  FD GA PPF L D++ AIP  C+ K P RS+SY+ RD+V V GLAA A  +++  VWPLYWFAQGTMFWALFV+GHDCGHGSFSNN +LN++VGHL HS ILVPYHGWRISHRTHH NHGH++NDESW P ++ + + +D   +  RF     ++ YP YLW RSPGKKGSHF P S LFVPSEK D++TS+ C+ AM ALL   +F  G + + K+Y +PY+IN+MWLDLVTYLHH   E  +PW+RG  W+Y+RG L+T D DYG  NN+HHDIGTHV+HHLFPQ+PHYH++EAT+A KP+LG+Y+ EP+KSGP+P +L+    +  ++  YV+D+GEVVYY++D
Sbjct:   57 LKVSAPVKIQLVEEDERERGRIDGVEEFFDSGAPPPFKLADVKNAIPKHCWAKDPWRSMSYVVRDVVVVFGLAAAAAYLNNWAVWPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRSLDNVTKKLRFTLPFPMLAYPIYLWSRSPGKKGSHFHPDSDLFVPSEKKDIITSTVCWTAMAALLVGLSFVMGPVQLLKLYGIPYIINVMWLDLVTYLHHHGHEDKLPWYRGKEWNYLRGGLTTLDRDYGWINNVHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSGPLPLYLLGSLIRSMRKDHYVKDDGEVVYYQTD 431          
BLAST of mRNA_F-serratus_M_contig97.21034.1 vs. uniprot
Match: A0A7N2M5X5_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2M5X5_QUELO)

HSP 1 Score: 473 bits (1217), Expect = 4.530e-162
Identity = 212/354 (59.89%), Postives = 271/354 (76.55%), Query Frame = 0
Query:   76 DEALFDYGAKPPFSLMDIRRAIPNECFDKSPLRSLSYLARDIVAVVGLAAGALAISSPLVWPLYWFAQGTMFWALFVVGHDCGHGSFSNNNRLNNIVGHLTHSFILVPYHGWRISHRTHHANHGHIDNDESWTPPTQSMVKDMDFGARMGRFNHWVMLVVYPFYLWLRSPGKKGSHFDPKSPLFVPSEKDDVLTSSACYAAMVALLAAATFKFGFLFVAKMYLVPYLINIMWLDLVTYLHHT--DKEVPWFRGSAWSYMRGALSTRDHDYGIFNNIHHDIGTHVVHHLFPQMPHYHIVEATKAVKPILGEYFVEPEKSGPIPFHLMKRFFKGAKECIYVEDEGEVVYYKSDDSV 427
            +E  F+ G+ PPF L DIR AIP  C+ K+P RS+SY+ RD+V V GLAA A  +++  VWPLYW AQGTMFWALFV+GHDCGHGSFSNN +LN++VGH+ HS ILVPYHGWRISHRTHH NHGH++NDESW P ++ + K +D   +  RF     ++ YPFYLW RSPGK GSHFDP S LFVPSE+ DV+TS+ C+ AM ALL    F  G + + K+Y VPY + +MWLDLVTYLHH   ++++PW+RG  WSY+RG L+T D DYG+ NNIHHDIGTHV+HHLFPQ+PHYH++EAT+A KP+LG+Y+ EP+KSGP+PFHL+    +  K+  YV D G+VVYY++D  +
Sbjct:   94 EELKFNPGSPPPFKLADIRAAIPKHCWVKNPWRSMSYVVRDVVVVFGLAAAAAYVNNWFVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSERIYKSLDVATKTLRFTVPFPMLAYPFYLWSRSPGKTGSHFDPSSDLFVPSERKDVITSTVCWTAMAALLVGLGFVMGPMQLLKLYGVPYWVFVMWLDLVTYLHHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSGPLPFHLIGNLIRSLKQDHYVSDTGDVVYYQTDSEL 447          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21034.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3TW74_VIGRR1.590e-16261.71omega-3 fatty acid desaturase, chloroplastic n=7 T... [more]
A0A2I4GED7_JUGRE2.330e-16261.34omega-3 fatty acid desaturase, chloroplastic-like ... [more]
A0A218XQE9_PUNGR2.810e-16256.85omega-3 fatty acid desaturase, chloroplastic-like ... [more]
Q0KIX7_EUSER3.230e-16257.33Omega-3-desaturase (Fragment) n=1 Tax=Eustoma exal... [more]
A0A7N2M5X5_QUELO4.530e-16259.89Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021863Fatty acid desaturase, N-terminalPFAMPF11960DUF3474coord: 56..125
e-value: 3.6E-16
score: 59.6
IPR005804Fatty acid desaturase domainPFAMPF00487FA_desaturasecoord: 135..384
e-value: 6.7E-34
score: 117.9
NoneNo IPR availablePANTHERPTHR32100:SF43coord: 45..427
NoneNo IPR availablePANTHERPTHR32100FAMILY NOT NAMEDcoord: 45..427
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..223
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..298
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 243..273
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 299..429
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 224..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.464
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 225..242
NoneNo IPR availableTMHMMTMhelixcoord: 272..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:750436..756082 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21034.1mRNA_F-serratus_M_contig97.21034.1Fucus serratus malemRNAF-serratus_M_contig97 747817..756247 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig97.21034.1 ID=prot_F-serratus_M_contig97.21034.1|Name=mRNA_F-serratus_M_contig97.21034.1|organism=Fucus serratus male|type=polypeptide|length=430bp
MKARSATAVFALGAALRTNAFVPGHAGSPSCATTRQSQVRMGISGKQGAK
RPYDRKLSVSSAVSVPITEPKQALADEALFDYGAKPPFSLMDIRRAIPNE
CFDKSPLRSLSYLARDIVAVVGLAAGALAISSPLVWPLYWFAQGTMFWAL
FVVGHDCGHGSFSNNNRLNNIVGHLTHSFILVPYHGWRISHRTHHANHGH
IDNDESWTPPTQSMVKDMDFGARMGRFNHWVMLVVYPFYLWLRSPGKKGS
HFDPKSPLFVPSEKDDVLTSSACYAAMVALLAAATFKFGFLFVAKMYLVP
YLINIMWLDLVTYLHHTDKEVPWFRGSAWSYMRGALSTRDHDYGIFNNIH
HDIGTHVVHHLFPQMPHYHIVEATKAVKPILGEYFVEPEKSGPIPFHLMK
RFFKGAKECIYVEDEGEVVYYKSDDSVFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021863FAS_N
IPR005804FA_desaturase_dom