prot_F-serratus_M_contig97.21020.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig97.21020.1
Unique Nameprot_F-serratus_M_contig97.21020.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length363
Homology
BLAST of mRNA_F-serratus_M_contig97.21020.1 vs. uniprot
Match: UPI000533FD64 (DNA repair protein RAD51 homolog 2 isoform X2 n=2 Tax=Platyrrhini TaxID=9479 RepID=UPI000533FD64)

HSP 1 Score: 195 bits (496), Expect = 1.800e-55
Identity = 129/358 (36.03%), Postives = 203/358 (56.70%), Query Frame = 0
Query:    3 GQQPLRRLGLDTELVRRMTSNGLHTVGDLLSRTELQLVQGLDLNRREVVSLLLSISGRIAPDTKTAGDLLRERREAGGNFFVATGLPTIDNSLQQGGFPTGMITELVGPAGIGKTQTCLTTAAQACLPASVGGLGKDCGVVFLDTERKFSPDRLVEIARARFPEHYGDSCPEGLERLLNQVMVYTVDNSAALLDRLESLQARIIEGNVRLIILDSIAALARRDFTRE---NTVKRQDLLTRQAAVLKSLAYTFSAVVLVTNQVTTTSWSTSSVRGHPDLIASHVNSSSRPRGGMCETEVLEGRQDSYVIPSLGNTWHHCVSNRVILEQHESHR-EMHLTKSPLAPRVSCWFTVRDTGL 356
            G + L+R+GL  EL  R++ + + T  D L  + L+L++   L+ R V  LL  +S   AP  +TA  +  +R       F++T L  +D +L  GG   G +TE+ GP G GKTQ C+  +  A LP ++GGL  +  VV++DTE  FS +RLVEIA +RFP ++     E L    ++V +Y       +L R+ESL+  II   ++L+I+DS+A++ R++F  +   N  +R   L R+A+ LK LA  FS  V++TNQ+TT    + ++    DL++        P   +  +E   G   S V  +LGNTW HCV+ R+IL+  +S R ++ + KSPLAP  S  +T+++ GL
Sbjct:    2 GSKKLKRVGLSEELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVYELLCMVSKACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH-GGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGL--EGAVVYIDTESAFSAERLVEIAESRFPRYFNTE--EKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITT--HLSGALASQADLVS--------PADDLSLSEGTSG--SSCVTAALGNTWSHCVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342          
BLAST of mRNA_F-serratus_M_contig97.21020.1 vs. uniprot
Match: UPI00202621C7 (DNA repair protein RAD51 homolog 2 isoform X5 n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI00202621C7)

HSP 1 Score: 195 bits (495), Expect = 1.920e-55
Identity = 127/355 (35.77%), Postives = 208/355 (58.59%), Query Frame = 0
Query:    7 LRRLGLDTELVRRMTSNGLHTVGDLLSRTELQLVQGLDLNRREVVSLLLSISGRIAPDTKTAGDLLRERREAGGNFFVATGLPTIDNSLQQGGFPTGMITELVGPAGIGKTQTCLTTAAQACLPASVGGLGKDCGVVFLDTERKFSPDRLVEIARARFPEHYGDSCPEGLERLLNQVMVYTVDNSAALLDRLESLQARIIEGNVRLIILDSIAALARRDFTRE---NTVKRQDLLTRQAAVLKSLAYTFSAVVLVTNQVTTTSWSTSSVRGHPDLIASHVNSSSRPRGGMCETEVLEGRQDS-YVIPSLGNTWHHCVSNRVILEQHESH-REMHLTKSPLAPRVSCWFTVRDTGL 356
            LRR GL  +L  R++ + + T  D L  + L+L++    + + V  LL ++S   AP  +T  ++  +R       F+ T L  +D  L  GG   G +TE+ GP+G GKTQ C+  +    LP+S+GGL  D  V+++DTE  FS +RL+EIA+ RFP ++     E L  + + + VY      ++L R+ESL+  II  NV+L+++DS+A++ R++F  +   N ++R +LL R+A++LK LA  FS  V++TNQ+TT   +  +V+  P  +A   + S    G        +G ++S YVI +LGNTW H V+ R+IL+  +S  R++ + KSP+AP  S  +T+ ++GL
Sbjct:    8 LRRAGLPRDLCERLSRHQIITCRDFLCLSLLELMKVTGQSYQNVKKLLHTVSQSCAPRMQTVYEMKIKRAIDRTTAFLPTTLEDLDKILH-GGIACGSLTEVTGPSGCGKTQFCIMLSLLTTLPSSMGGL--DGAVIYIDTESAFSAERLIEIAQHRFPHYFATK--EKLTSMPSSIHVYRELTCNSVLKRIESLEEEIISKNVKLLVIDSVASVVRKEFDTKLHGNLLERSNLLAREASILKYLAEEFSIPVILTNQITTWLSNGLAVQADPLSLADDFSLSEGCSG--------KGNEESGYVIAALGNTWSHSVNTRLILQYLDSQTRQLLIAKSPVAPFTSFLYTIENSGL 349          
BLAST of mRNA_F-serratus_M_contig97.21020.1 vs. uniprot
Match: A0A337RXM3_FELCA (RAD51 paralog B n=34 Tax=Laurasiatheria TaxID=314145 RepID=A0A337RXM3_FELCA)

HSP 1 Score: 194 bits (493), Expect = 1.970e-55
Identity = 133/360 (36.94%), Postives = 200/360 (55.56%), Query Frame = 0
Query:    3 GQQPLRRLGLDTELVRRMTSNGLHTVGDLLSRTELQLVQGLDLNRREVVSLLLSISGRIAPDTKTAGDLLRERREAGGNFFVATGLPTIDNSLQQGGFPTGMITELVGPAGIGKTQTCLTTAAQACLPASVGGLGKDCGVVFLDTERKFSPDRLVEIARARFPEHYGDSCPEGLERLLNQVMVYTVDNSAALLDRLESLQARIIEGNVRLIILDSIAALARRDFTRE---NTVKRQDLLTRQAAVLKSLAYTFSAVVLVTNQVTTTSWSTSSVRGHPDLI--ASHVNSSSRPRGGMCETEVLEGRQDSYVIPSLGNTWHHCVSNRVILEQHESHR-EMHLTKSPLAPRVSCWFTVRDTGL 356
            G + LRR+GL  EL  R+  + + T  D L  + L+L++   L+ R V  LL  +S   AP  +TA  L  +   +    F+AT L  +D +L  GG   G +TE+ GP G GKTQ C+  +  A LP ++GGL  + GVV++DTE  FS +RLVEIA +RFP ++     E L    ++V +Y   +   +L R+ESL+  II   V+L+I+DS+A++ R++F  +   N  +R   L R+AA LK LA  FS  V++TNQ+TT    + ++    DL+  A  ++ S  P G  C            V  +LGNTW H V+ R+I +   S R ++ + KSPLAP  S  +T++  GL
Sbjct:    2 GSKKLRRVGLSQELCDRLNRHQIVTCQDFLCLSPLELMKMTGLSYRGVHELLCMVSRACAPQMQTAYGLKMQTSASVSPVFLATTLSALDEALH-GGVACGSLTEITGPPGCGKTQFCMMMSILATLPTNMGGL--EGGVVYIDTESAFSAERLVEIAESRFPRYFNTE--EKLLLTSSKVHLYRELSCDEVLQRIESLEEEIISKRVKLVIIDSVASVVRKEFDAQLQGNMRERNKFLAREAATLKYLAEEFSIPVILTNQITT--HLSGALASQADLVSPADDLSLSEGPSGSSC------------VTAALGNTWSHSVNTRLIFQYLGSERRQILIAKSPLAPFTSFAYTIQKEGL 342          
BLAST of mRNA_F-serratus_M_contig97.21020.1 vs. uniprot
Match: A0A8D0C0M1_9SAUR (RAD51 paralog B n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0C0M1_9SAUR)

HSP 1 Score: 194 bits (493), Expect = 2.500e-55
Identity = 129/357 (36.13%), Postives = 202/357 (56.58%), Query Frame = 0
Query:    7 LRRLGLDTELVRRMTSNGLHTVGDLLSRTELQLVQGLDLNRREVVSLLLSISGRIAPDTKTAGDLLRERREAGGNFFVATGLPTIDNSLQQGGFPTGMITELVGPAGIGKTQTCLTTAAQACLPASVGGLGKDCGVVFLDTERKFSPDRLVEIARARFPEHYGDSCPEGLERLLNQVMVYTVDNSAALLDRLESLQARIIEGNVRLIILDSIAALARRDFTRE---NTVKRQDLLTRQAAVLKSLAYTFSAVVLVTNQVTTTSWSTSSVRGHPDLIASHVNSSSRPRGGMCETEVLEGRQD---SYVIPSLGNTWHHCVSNRVILEQHESH-REMHLTKSPLAPRVSCWFTVRDTGL 356
            LRR GL   L  R++ + + T  D L  + L+L++    +   V  LL ++S   AP  +T  ++  +R       F+ T L  +D +L  GG   G +TE+ GP+G GKTQ C+     A LP S GGL  D  V+++DTE  FS +RL+EIA+ RFP+++     E L  + + + +Y      ++L R+ESL+  II  NV+LII+DS+A++ R++F  +   N  +R DLLTR+A+VLK LA  FS  V++TNQ+TT  W +  +    DL++        P   +  T+     +D   SYV  +LGNTW H V+ R+IL+  +   R++ + KSP+AP  S  +++  +GL
Sbjct:    8 LRRTGLPQNLCERLSRHQIXTCQDFLCLSTLELMKVTGQSFWNVQKLLHTVSQSCAPRMQTVYEMKMQRTINPSLAFLPTTLEDLDKALH-GGIACGSLTEVTGPSGCGKTQFCMMMGLLATLPTSXGGL--DGAVIYIDTESAFSAERLIEIAKHRFPDYFATE--EKLISMPSNIHLYRELTCDSVLKRIESLEEEIISKNVKLIIIDSVASVIRKEFNTKLEGNLKERSDLLTREASVLKYLAEEFSIPVILTNQITT--WLSDGLAVPADLLS--------PPDELSATKGYSSNRDGDSSYVTAALGNTWSHSVNTRLILQYLDFQTRQLLVAKSPIAPFTSFPYSIEKSGL 349          
BLAST of mRNA_F-serratus_M_contig97.21020.1 vs. uniprot
Match: A0A6P8RTP8_GEOSA (DNA repair protein RAD51 homolog 2 isoform X1 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RTP8_GEOSA)

HSP 1 Score: 195 bits (495), Expect = 2.740e-55
Identity = 130/355 (36.62%), Postives = 204/355 (57.46%), Query Frame = 0
Query:    7 LRRLGLDTELVRRMTSNGLHTVGDLLSRTELQLVQGLDLNRREVVSLLLSISGRIAPDTKTAGDLLRERREAGGNFFVATGLPTIDNSLQQGGFPTGMITELVGPAGIGKTQTCLTTAAQACLPASVGGLGKDCGVVFLDTERKFSPDRLVEIARARFPEHYGDSCPEGLERLLNQVMVYTVDNSAALLDRLESLQARIIEGNVRLIILDSIAALARRDFTRE---NTVKRQDLLTRQAAVLKSLAYTFSAVVLVTNQVTTTSWSTSSVRGHPDL-IASHVNSSSRPRGGMCETEVLEGRQDSYVIPSLGNTWHHCVSNRVILEQHESH-REMHLTKSPLAPRVSCWFTVRDTGL 356
            L+R GL  EL  R+  + +HT  DL   + L+L++    + + V  LL ++S   AP  +TA D+ + +       F+ T L ++D  L  GG   G +TE+ GP+G GKTQ C+  +  A LP+ +GGL  +  VVF+DTE  FS +RLVE+A  RFPE++     E +  + +++ +Y       +L R+ESL+  II   V+L+I+DS+A++ R++F  +   N  KR +LL R+A++LK LA  FS  V++TNQ+TT        R  P + + S  +  S       E E + G    YV  +LGNTW H V+ R+IL+ H +H R++ + KSPLAP     +T++++GL
Sbjct:    6 LKRTGLSQELCDRLGRHHIHTCQDLFCLSLLELMKVTGQSYQNVQRLLQTVSKSCAPRMQTAYDMRKRQVNDPILAFLPTNLDSLDKVLY-GGVACGALTEVTGPSGCGKTQFCILMSLLATLPSCIGGLNGN--VVFIDTESTFSAERLVEMATHRFPEYFDTE--EKILSMTSRIHLYRELTCEDVLKRIESLEEEIISKKVKLVIVDSVASVVRKEFDTQLQGNLTKRSNLLAREASLLKYLAEEFSIPVILTNQITTRL-----SRNAPRIDLVSPADDLSLSEASETEEEGVRG----YVTAALGNTWSHSVNTRLILQYHGAHGRQIIVAKSPLAPFSVFSYTIQNSGL 346          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000533FD641.800e-5536.03DNA repair protein RAD51 homolog 2 isoform X2 n=2 ... [more]
UPI00202621C71.920e-5535.77DNA repair protein RAD51 homolog 2 isoform X5 n=1 ... [more]
A0A337RXM3_FELCA1.970e-5536.94RAD51 paralog B n=34 Tax=Laurasiatheria TaxID=3141... [more]
A0A8D0C0M1_9SAUR2.500e-5536.13RAD51 paralog B n=1 Tax=Salvator merianae TaxID=96... [more]
A0A6P8RTP8_GEOSA2.740e-5536.62DNA repair protein RAD51 homolog 2 isoform X1 n=5 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 102..286
e-value: 5.1E-4
score: 29.4
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 72..358
e-value: 1.0E-40
score: 139.6
IPR016467DNA recombination and repair protein, RecA-likePIRSFPIRSF005856Rad51coord: 2..361
e-value: 2.3E-61
score: 205.5
IPR030548DNA repair protein RAD51 homologue 2PANTHERPTHR46456FAMILY NOT NAMEDcoord: 4..360
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 80..262
score: 30.506
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 84..359

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:280345..295557 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21020.1mRNA_F-serratus_M_contig97.21020.1Fucus serratus malemRNAF-serratus_M_contig97 280192..295614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig97.21020.1 ID=prot_F-serratus_M_contig97.21020.1|Name=mRNA_F-serratus_M_contig97.21020.1|organism=Fucus serratus male|type=polypeptide|length=363bp
MAGQQPLRRLGLDTELVRRMTSNGLHTVGDLLSRTELQLVQGLDLNRREV
VSLLLSISGRIAPDTKTAGDLLRERREAGGNFFVATGLPTIDNSLQQGGF
PTGMITELVGPAGIGKTQTCLTTAAQACLPASVGGLGKDCGVVFLDTERK
FSPDRLVEIARARFPEHYGDSCPEGLERLLNQVMVYTVDNSAALLDRLES
LQARIIEGNVRLIILDSIAALARRDFTRENTVKRQDLLTRQAAVLKSLAY
TFSAVVLVTNQVTTTSWSTSSVRGHPDLIASHVNSSSRPRGGMCETEVLE
GRQDSYVIPSLGNTWHHCVSNRVILEQHESHREMHLTKSPLAPRVSCWFT
VRDTGLEEVSRV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR013632DNA_recomb/repair_Rad51_C
IPR016467DNA_recomb/repair_RecA-like
IPR030548RAD51B
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase