prot_F-serratus_M_contig97.21014.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig97.21014.1
Unique Name	prot_F-serratus_M_contig97.21014.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	244

Homology

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BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot
Match: A0A1W0A5I5_9STRA (40S ribosomal protein S3-3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5I5_9STRA)

HSP 1 Score: 335 bits (859), Expect = 4.610e-114
Identity = 170/214 (79.44%), Postives = 190/214 (88.79%), Query Frame = 0

Query:   21 NVSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEEI 234
            N+SKKRKF+ADGVF+AELNE L  ELAE+GY+GVEVRVTP+RTE+II ATR Q VLGEKGQRIRELTSVVQKRFNF D AVELYAERVA RGLCAQ QAESLK+KLLGGLAVRRA  GVLRF+MESGAKG EVIV+GKLRAQRAKAMKF++GYM+K+G    +YVD AVRHV+MRQGVLGV V+IMLPHDPTG+ GPK  L DV+TIL PKEE+
Sbjct:    6 NISKKRKFIADGVFFAELNEFLQTELAEDGYSGVEVRVTPVRTEVIIRATRTQEVLGEKGQRIRELTSVVQKRFNFADGAVELYAERVANRGLCAQAQAESLKFKLLGGLAVRRAAMGVLRFVMESGAKGCEVIVSGKLRAQRAKAMKFKEGYMVKTGNANLEYVDTAVRHVLMRQGVLGVKVNIMLPHDPTGRLGPKRQLDDVVTILEPKEEV 219

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BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot
Match: A0A0D2UG16_GOSRA (KH type-2 domain-containing protein n=47 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0D2UG16_GOSRA)

HSP 1 Score: 335 bits (858), Expect = 8.060e-114
Identity = 168/216 (77.78%), Postives = 193/216 (89.35%), Query Frame = 0

Query:   18 MATNVSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEE 233
            MA  +SKKRKFVADGVFYAELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRF FP+++VELYAE+V  RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EVIV+GKLRAQRAK+MKF+DGYMI SG   ++Y+D AVRHV++RQGVLG+ V IML  DP GK+GP TPL D++TI PPKEE
Sbjct:    1 MAAQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHPPKEE 216

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BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot
Match: A0A7J6G178_CANSA (KH type-2 domain-containing protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A7J6G178_CANSA)

HSP 1 Score: 334 bits (856), Expect = 1.630e-113
Identity = 168/216 (77.78%), Postives = 195/216 (90.28%), Query Frame = 0

Query:   18 MATNVSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEE 233
            MAT +SKKRKFVADGVF+AELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRF FP+++VELYAE+V  RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EVIV+GKLRAQRAK+MKF+DGYMI SG+  ++Y+D AVRHV++RQGVLG+ V IML  DP GK+GP TPL DVITI PPK++
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDVITIHPPKDD 216

[Close]

BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot
Match: A0A0A0LHQ6_CUCSA (KH type-2 domain-containing protein n=3 Tax=fabids TaxID=91835 RepID=A0A0A0LHQ6_CUCSA)

HSP 1 Score: 334 bits (856), Expect = 1.800e-113
Identity = 169/216 (78.24%), Postives = 193/216 (89.35%), Query Frame = 0

Query:   18 MATNVSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEE 233
            MAT +SKKRKFVADGVF+AELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRF FP+++VELYAE+V  RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EVIV+GKLRAQRAK+MKF+DGYMI SG+   DY+D AVRHV++RQGVLG+ V IML  DP GK+GP TPL DV+TI  PKEE
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDVVTIHSPKEE 216

[Close]

BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot
Match: A0A022R9F8_ERYGU (KH type-2 domain-containing protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A022R9F8_ERYGU)

HSP 1 Score: 333 bits (855), Expect = 1.870e-113
Identity = 168/216 (77.78%), Postives = 194/216 (89.81%), Query Frame = 0

Query:   18 MATNVSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEE 233
            MAT +SKKRKFVADGVF+AELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRF FP+ +VELYAE+V  RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EVIV+GKLRAQRAK+MKF+DGYMI SG+  ++Y+D AVRHV++RQGVLG+ V IML  DP GK+GP TPL D++TI PPKEE
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFRFPEGSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHPPKEE 216

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig97.21014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1W0A5I5_9STRA	4.610e-114	79.44	40S ribosomal protein S3-3 n=1 Tax=Thraustotheca c...	[more]
A0A0D2UG16_GOSRA	8.060e-114	77.78	KH type-2 domain-containing protein n=47 Tax=Mesan...	[more]
A0A7J6G178_CANSA	1.630e-113	77.78	KH type-2 domain-containing protein n=3 Tax=Pentap...	[more]
A0A0A0LHQ6_CUCSA	1.800e-113	78.24	KH type-2 domain-containing protein n=3 Tax=fabids...	[more]
A0A022R9F8_ERYGU	1.870e-113	77.78	KH type-2 domain-containing protein n=2 Tax=Pentap...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004044	K Homology domain, type 2	PFAM	PF07650	KH_2	coord: 37..111 e-value: 4.1E-12 score: 45.7
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 38..109 score: 12.181
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 123..205 e-value: 5.2E-21 score: 75.0
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 15..108 e-value: 1.8E-45 score: 154.8
IPR005703	Ribosomal protein S3, eukaryotic/archaeal	TIGRFAM	TIGR01008	TIGR01008	coord: 25..210 e-value: 2.8E-68 score: 227.5
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 110..241 e-value: 1.2E-61 score: 208.6
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 110..209
None	No IPR available	PANTHER	PTHR11760:SF41		coord: 18..235
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 18..235
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 27..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig97	contig	F-serratus_M_contig97:239906..243784 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig97.21014.1	mRNA_F-serratus_M_contig97.21014.1	Fucus serratus male	mRNA	F-serratus_M_contig97 239866..244468 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig97.21014.1 ID=prot_F-serratus_M_contig97.21014.1|Name=mRNA_F-serratus_M_contig97.21014.1|organism=Fucus serratus male|type=polypeptide|length=244bp
MVWYEISRRVAGARGTAMATNVSKKRKFVADGVFYAELNELLTQELAEEG
YAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDA
VELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKG
AEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLG
VTVSIMLPHDPTGKEGPKTPLSDVITILPPKEEIALEVTPNFG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004044	KH_dom_type_2
IPR001351	Ribosomal_S3_C
IPR015946	KH_dom-like_a/b
IPR005703	Ribosomal_S3_euk/arc
IPR036419	Ribosomal_S3_C_sf
IPR009019	KH_sf_prok-type