prot_F-serratus_M_contig966.20980.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig966.20980.1
Unique Nameprot_F-serratus_M_contig966.20980.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length691
Homology
BLAST of mRNA_F-serratus_M_contig966.20980.1 vs. uniprot
Match: A0A024THI9_9STRA (BSD domain-containing protein n=6 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THI9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.940e-23
Identity = 138/471 (29.30%), Postives = 204/471 (43.31%), Query Frame = 0
Query:  195 LTAQYKEMVEGNVVSEEEFWE--SRRRTLAEEDAKSASRHTGTPSDMPSDLVAETTSSG-TLKFKLNARTIHSIFTMYPVVFKAYQANVPTEMTEKEFWTKYVQSAYFNRDRGADGPSSSMSGNKRKSAVAGGGA------DDMFLRFAAQEAERERKEKDEMLQAGSVQGSRGGGGTAASKKRLEAGAVDPMVDLTSQWGDYHTREVDDADP-AEELTEEAKRRKEVVGKFNRHARLVMQPPDGGSGSGRRPALVDSAALATDLPELRQHDKVTQEKLNIANKNRYHE---------------GGGATSAGSQSHIQPAKAVEEVTLAEAKEELGPEFSILAVRPAISKAVATPDQALSALRKCTKETDKGIGNAASLQGYPEDFIGGMHRHFQIVGELLRHFY-----ATLDRPRTDASATVKLQRLEDRMTAKYQELNGERKRLPRDATGNRLSAVIKPLMDCLNHAF 635
            + + YK  V G ++SE +FW    R++ L  E +K   + TG  S++ SD+  E  S G ++K+ LN   IH IF  YPVV+ AYQ  VP +MT  EFW  +V+S Y +RD               K+++A GGA      +D+F R+       E K + ++ Q+G                  +   VDP+++L + + D      D  DP A   T +       + KFNRHA  V+Q     +      A  DS  LA +L +L          L++ N +RY E               GGGA     QS    A  V    +  +  +L   F   A    I K V       +AL +  K TD    ++        +F   +  HF  V ELLRH+      ATLD     A A  KL+R++ +M  K++ L   R +LP  A    L+ ++ P +D LN  F
Sbjct:  166 IASSYKHFV-GGLISENDFWNLPCRKQLLLTEQSKR--QRTGKTSEILSDVQGENQSGGKSVKYNLNPEIIHQIFVQYPVVYLAYQEQVPDKMTGLEFWGLFVKSKYAHRD---------------KNSLANGGAHALGQPEDLFTRY-------EEKYEAKLKQSGP----------------RDVSNVDPLINLAASYTD------DAPDPTAARATTDTN-----LAKFNRHAADVLQVKVTAAS-----AAQDSVTLAVELDDLAPTVPTPVLPLSLENASRYFEHDSHSIRPNATKSESGGGA----GQSTKWHASQVAMSRMMLSSLDLSAAFPANA--RGILKEVLNESDETNALDQANKHTDTRFISS--------NFKTQLTNHFHDVSELLRHYLSFKAKATLD---GTAEARSKLERIKVKMGEKFEYLEHIRNKLP-PAEKTTLAPLLTPFLDQLNIPF 561          
BLAST of mRNA_F-serratus_M_contig966.20980.1 vs. uniprot
Match: A0A151ZEA7_9MYCE (General transcription factor IIH component n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZEA7_9MYCE)

HSP 1 Score: 114 bits (286), Expect = 7.390e-23
Identity = 129/489 (26.38%), Postives = 215/489 (43.97%), Query Frame = 0
Query:  183 RQRAALLAGDDVLTAQYKEMVEGNVVSEEEFWESRRRTLAEEDAKSASRHTGTPSDMPSDLVAETTS-SGTLKFKLNARTIHSIFTMYPVVFKAYQANVPTEMTEKEFWTKYVQSAYFNRDRGADGPSSSMSGNKRKSAVAGGGADDMFLRFAAQEAERERKEKDEMLQAGSVQGSRGGGGTAASKKRLEAGAVDPMVDLTSQWGDYHTRE---VDDADPAEELTEEAKRRKEVVGKFNRHARLVMQPPDGGS-------------GSGRRPAL-VDSAALATDLP--ELRQHDKVTQEKLNIANKNRYHEGGGATSAGSQSHIQPAKAVEEVTLAEAK--EELGPEFSILAVRPAISKAVATPDQALSA-----LRKCTKETDKGIGNAASLQGY---PEDFIGGMHRHFQIVGELLRHFYATLDRPRTDASATV----KLQRLEDRMTAKYQELNGERKRLPRDATGNRLSAVIKPLMDCLNHAFEK 637
            +QR  LLA +  L   +  +V   V+SE +FWESR+  L  + ++S  +  G PS++ SD+   T S S  LK++L    IH IF  YP V KAY+ANVPT+++E++FW KY+ S +F+R+RG               A A  G DD+F R+   E  RE K                       K+++E   ++P++D+++  G+        +D +   ++L +       ++ KFNRH+ LV+   D                 S +   L ++   L   +   EL   +      L I ++ RY EG  A    SQ  ++  + + E+   +    ++ G  FSI+  +P      A+   + +      L++   ++    G       Y      F    +  F+   ELLRHF+AT   P   A  T     K  +L D ++  Y  L  ++K L      N+ S  +  +++ LN + EK
Sbjct:  182 KQRVTLLASNPELKEVFDSLVGKKVISETDFWESRKGLLKNDASRSDKQSIGMPSNLLSDVRPTTDSQSNQLKYRLTPTVIHQIFIQYPAVEKAYKANVPTKISEQDFWKKYIMSQHFHRNRG-------------NQATAPSGDDDLFSRYDTDEW-REIK---------------------ILKRKIED--INPLLDISATEGEKEAGYGVIIDQSQNPDKLEKVLP----LLRKFNRHSSLVLGATDISQQQEHQATKKTKYDNSDKYKLLEINKKILGEHIENKELENENTPQLPTLKILDQKRYFEGANAGGP-SQFTMESKQQLTEMFQKQYSKLQQQGCSFSIVNQKPVTPVLSASNSNSSNVPLNPILQEIQSQSTGSAGTKTQSDEYNLKDGPFKTDFYHTFRTSNELLRHFWATTYTPGRGAPPTPQQIEKNTKLCDAISKHYDILENKKKSLISSNKNNQASLFLS-ILESLNKSIEK 627          
BLAST of mRNA_F-serratus_M_contig966.20980.1 vs. uniprot
Match: A0A067C7I3_SAPPC (BSD domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C7I3_SAPPC)

HSP 1 Score: 113 bits (282), Expect = 1.270e-22
Identity = 133/486 (27.37%), Postives = 214/486 (44.03%), Query Frame = 0
Query:  162 GQPLRQRDSMPGGRMRDVHDA--RQRAALLAGD-DVLTAQYKEMVEGNVVSEEEFWE--SRRRTLAEEDAKSASRHTGTPSDMPSDLVAETTSSG-TLKFKLNARTIHSIFTMYPVVFKAYQANVPTEMTEKEFWTKYVQSAYFNRDRGADGPSSSMSGNKRKSAVAGGGADDMFLRFAAQEAERERKEKDEMLQAGSVQGSRGGGGTAASKKRLEAGAVDPMVDLTSQWGDYHTREVDDADPAEELTEEAKRRKEVVGKFNRHARLVMQPPDGGSGSGRRPALVDSAALATDL--PELRQHDKVTQEKLNIANKNRY--HEGGGATSAGSQSHIQPAKAVEEVTLAEAKEELGPEFSILAVRPAISKAVATPDQALSALRKCTKETDKGIGNAASLQGYPEDFIGGMHRHFQIVGELLRHFYATLDRPRTDAS--ATVKLQRLEDRMTAKYQELNGERKRLPRDATGNRLSAVIKPLMDCLNHAF 635
            GQ L Q  + P  +   + +   +QRAALLA   + L  Q+ +MV G ++SE +FW    R++ L  E  K   + TG  S++ +D+  +  S    +K+ LN   IH IF  YPVV+ AYQ  VP +M   EFWT +V+S Y +RDR            K + +    G +D+F  +       E+ +K +   A  VQG                  VDP++DLT+   D     V+      E+T+        + KFNRHA  V+          ++P     A LA  +   +L+         L++ N  RY  H+            ++PA+   E  L+        + ++ A  P    A  T +    + +  + ET     +    +  P DF   +   F  V ELLRH+ +  ++  +D S  A +KL+R++ +M  K++ ++  R +LP  A    L  ++ PL D LN  F
Sbjct:  101 GQRLVQSSATPASKQEVMSETERKQRAALLAAHPNTLKRQHTDMVTGGLISESDFWNLTCRKQLLMAEAEKR--QKTGKTSEILTDVQGQNQSGEQAVKYNLNPEIIHQIFVQYPVVYMAYQEQVPDKMDGVEFWTMFVKSKYAHRDR-----------LKHQQS----GVEDLFTIY------EEKWQKAQTTPA--VQG-----------------LVDPLIDLTATAQDNI---VNTTIAPPEITDTN------IAKFNRHAADVLNAAAALQPKKKKPMAAKKAVLAEAIVIDDLQAPAPAPHIPLSLDNTARYFEHDEHSLVHRSFMQQLEPAQRAFERMLSA-------QPNLTAAFPKGPVANITAEILAESSQSASSETVANPRSEQHARFIPNDFKTLLTNLFHDVNELLRHYLSFKEKVASDGSPEARLKLERIKAKMGEKWEHVDRMRLKLP-PAERTSLGPLLLPLSDQLNIPF 527          
BLAST of mRNA_F-serratus_M_contig966.20980.1 vs. uniprot
Match: A0A1Z5JFQ2_FISSO (Transcription initiation factor TFIIH subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ2_FISSO)

HSP 1 Score: 113 bits (282), Expect = 2.070e-22
Identity = 142/523 (27.15%), Postives = 222/523 (42.45%), Query Frame = 0
Query:  185 RAALLAGDDVLTAQYKEMVEGN-VVSEEEFWESRRRTLAEEDAK-SASRHTGTPSDMPSDLVAETTSSGTLKFKLNARTIHSIFTMYPVVFKAYQANVPTEMTEKEFWTKYVQSAYFNRDRG---------ADGPSSSMSGNKRKSA----------VAGGGADDMFLRFAAQEAERERKEKDEMLQAGSVQGSRGGGGTAASKKRLEAGAVDPMVDLTSQWGDYHTREVDDADPAEELTEEAKRRKEVVGKFNRHARLVMQPPDGGSGSG------RRPALV---DSAA-----LATDLPELRQHDKVTQEKLNIANKNRYHEGGGATSAGSQSHIQPAKAVEEVTLAEAKEELGPEFSILA------VRPAISKAVATPD-----------------QALSAL-RKCTKETDKGIGNAASLQGYPEDFIGGMHRHFQIVGELLRHFYATLDRPRTDASATVKLQRLEDRMTAKYQELNGERKRLPRDATGNRLSAVIKPLMDCLNHAFEKSEERKRRGPGG 648
            RA+LLA    L  Q+  +V+    ++E+EFWE+ +  L EE A+ S     G  S M S L      SG  +  L    +  IF MYP V KAY+  VP E+++++FW KY++S YF+RDRG         A+G  ++ + N +K +           A  G DD F R+A Q+ ++E+K  D                     +RL  G  D    L ++ G +  +   D  P+    +E   R  V+ K+NRH  +V+ P D  +G+       + P  V   D  A     +  ++  L    + T+E+ N A+  +  +     S  +       K     T  E  EE    + + A      V   + + VA                    + LSAL +K   +      + A ++  P +F   +  +F+   ELLRHF+A     R   ++  KL R+   M   Y+EL+  RK  P    GN +  +  PLMD L+ AF+   E    G GG
Sbjct:  115 RASLLAAHPSLRQQHAYLVQETCTLTEDEFWETHQHLLQEEHARISGLAQAGRSSFMQSRLPT----SG--RITLGVEEMRQIFIMYPAVHKAYEEKVPLELSDEQFWRKYLESEYFHRDRGRLGTVARNHANGEETNNNKNGKKPSGPSMEEQDARAAAVGTDDFFSRYA-QKLQQEQKPLDHTKVG----------------RRLATGQFDLASTLETERG-HLLQGPKDNHPSNVHDDEKGAR--VIAKYNRHWAMVLHPDDAVAGADLLNVARQSPLQVLPDDEDAKWGGGVHREMQRLVGFAEATEEEANHADGRKADDAYEPLSLKNVEAYYSFKQSGNNTTTETSEEANERYKVFANTILGNVNALVQELVADETKLTELPPTCFPPPKLGRELLSALTKKMAADARTDSASLAMVEQLPSEFREKLQIYFRRCSELLRHFFAL----RQMKNSGEKLARIVLGMETFYRELDTMRKSFPHTDAGNMMQKMCLPLMDQLDWAFKLHREGSGVGGGG 607          
BLAST of mRNA_F-serratus_M_contig966.20980.1 vs. uniprot
Match: A0A7S2LIU1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LIU1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.950e-22
Identity = 91/267 (34.08%), Postives = 135/267 (50.56%), Query Frame = 0
Query:  185 RAALLAGDDVLTAQYKEMVEGNVVSEEEFWESRRRTLAEEDAKSASR-HTGTPSDMPSDLVAETTSSGTLKFKLNARTIHSIFTMYPVVFKAYQANVPTEMTEKEFWTKYVQSAYFNRDRGADGPSSSMSGNKRKSAVAG---------------GGADDMFLRFAAQEAERERKEKDEMLQAG--SVQGSRGGGGTAASKKRLEAGAVDPMVDLTSQWGDYHTREVDDADPAEELTEEAKRRKEVVGKFNRHARLVMQPPDGGSGS 433
            RAALLA D  L AQ+K +V GN +SE++FW +  R LA+E A+   + H GT + M S+L  +    G  K +L    I  IF +YP V KAY+  VP E++E++FW KY++S YF RDRG  G + S S +   S   G                G++D+F R+   E +RER+E++     G  S  G++ G   A  +  L +        L +   D+H +  D++  A            V+ K+NRH  LVM P    +G+
Sbjct:  133 RAALLASDVALQAQHKLLVGGNTLSEDDFWSAHERKLADEAARIHGKVHKGTETSMRSNL--DLGMGG--KVRLGVEEIRQIFILYPAVHKAYEEKVPLELSEEQFWRKYLESEYFYRDRGRVGGTKSTSVSDGSSGKDGKGSNNRGDDVTHAAVAGSEDIFSRYDV-ELQREREEREAGALGGMPSKVGNKLGRDLAVGQFDLSSTVQTERTKLGAL--DFHPQTSDNSQGAR-----------VIKKYNRHWALVMNPEKAAAGN 381          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig966.20980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024THI9_9STRA6.940e-2329.30BSD domain-containing protein n=6 Tax=Aphanomyces ... [more]
A0A151ZEA7_9MYCE7.390e-2326.38General transcription factor IIH component n=1 Tax... [more]
A0A067C7I3_SAPPC1.270e-2227.37BSD domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1Z5JFQ2_FISSO2.070e-2227.15Transcription initiation factor TFIIH subunit 1 n=... [more]
A0A7S2LIU1_9STRA6.950e-2234.08Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 590..610
NoneNo IPR availableCOILSCoilCoilcoord: 331..351
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 12..79
NoneNo IPR availableSUPERFAMILY140383BSD domain-likecoord: 179..218
IPR005607BSD domainSMARTSM00751wurzfinal6coord: 249..301
e-value: 3.6E-6
score: 36.5
IPR005607BSD domainPFAMPF03909BSDcoord: 254..303
e-value: 1.4E-9
score: 37.8
IPR005607BSD domainPROSITEPS50858BSDcoord: 249..301
score: 10.958
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 23..108
e-value: 1.9E-11
score: 44.1
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 15..644

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig966contigF-serratus_M_contig966:70178..76216 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig966.20980.1mRNA_F-serratus_M_contig966.20980.1Fucus serratus malemRNAF-serratus_M_contig966 70025..76678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig966.20980.1 ID=prot_F-serratus_M_contig966.20980.1|Name=mRNA_F-serratus_M_contig966.20980.1|organism=Fucus serratus male|type=polypeptide|length=691bp
MAAIAGPALGAGEKVLITADAVHKKIAGTVWFTSRRTLWRASDGKAPVQR
VDVPWAAIKSFQCSPANEARAMIRLLRVTEGDPPIILRFLGSPADTPREV
MERAQTAIRRAMKGDVEGDVEGEKGSEEAGTANGGKGGKNGGPSKKMKWK
TRKGLMGTASGGQPLRQRDSMPGGRMRDVHDARQRAALLAGDDVLTAQYK
EMVEGNVVSEEEFWESRRRTLAEEDAKSASRHTGTPSDMPSDLVAETTSS
GTLKFKLNARTIHSIFTMYPVVFKAYQANVPTEMTEKEFWTKYVQSAYFN
RDRGADGPSSSMSGNKRKSAVAGGGADDMFLRFAAQEAERERKEKDEMLQ
AGSVQGSRGGGGTAASKKRLEAGAVDPMVDLTSQWGDYHTREVDDADPAE
ELTEEAKRRKEVVGKFNRHARLVMQPPDGGSGSGRRPALVDSAALATDLP
ELRQHDKVTQEKLNIANKNRYHEGGGATSAGSQSHIQPAKAVEEVTLAEA
KEELGPEFSILAVRPAISKAVATPDQALSALRKCTKETDKGIGNAASLQG
YPEDFIGGMHRHFQIVGELLRHFYATLDRPRTDASATVKLQRLEDRMTAK
YQELNGERKRLPRDATGNRLSAVIKPLMDCLNHAFEKSEERKRRGPGGAR
KAGANTGGWVRADEDDDDEEEEEDEDDEEQELRGGWSVVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD_dom
IPR013876TFIIH_BTF_p62_N
IPR027079Tfb1/GTF2H1