prot_F-serratus_M_contig966.20978.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig966.20978.1
Unique Name	prot_F-serratus_M_contig966.20978.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	185

Homology

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: W2QPF8_PHYPN (H/ACA ribonucleoprotein complex subunit n=8 Tax=Peronosporaceae TaxID=4777 RepID=W2QPF8_PHYPN)

HSP 1 Score: 145 bits (366), Expect = 1.180e-40
Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGE------GGGG 120
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SF +GDKV+I   KLLP+SRFT +      GGGG
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPGKKPTGGGG 140

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A2D4BHY5_PYTIN (H/ACA ribonucleoprotein complex subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BHY5_PYTIN)

HSP 1 Score: 137 bits (344), Expect = 1.300e-37
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0

Query:   32 GEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            G F+H CE+EMVYK TN  VPYFNAGAYL+NKTKIGKVDEILG +N VMFTVKPD GV A+SFK+GDKV+I   KLLP+SRFT
Sbjct:   28 GAFLHACENEMVYKXTNDKVPYFNAGAYLENKTKIGKVDEILGSINNVMFTVKPDAGVTATSFKAGDKVYISPDKLLPLSRFT 110

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A662WI78_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI78_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.850e-37
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 0

Query:   30 ELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +LG F+H CEDEMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPD+GV+A+SF++GDKVFI   KLLP+SRFT
Sbjct:   61 QLGSFMHSCEDEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSAASFQAGDKVFISPDKLLPLSRFT 145

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S1UG96_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG96_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.140e-37
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTG--EGGGG 120
            YD+GPPD ++ELG+F+   E EM+++LTN  +PYFNA  YL+NKTKIGK+DEI GP+N V FTVKPD G++A SFK  D V+I   KLLP++RFT   +GGGG
Sbjct:   12 YDEGPPDSVIELGKFVQSVEGEMLFQLTNKDIPYFNAPMYLENKTKIGKLDEIAGPINEVYFTVKPDEGISADSFKKDDLVYINPMKLLPLTRFTNPSKGGGG 114

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: B8BZE8_THAPS (H/ACA ribonucleoprotein complex subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZE8_THAPS)

HSP 1 Score: 135 bits (341), Expect = 5.840e-37
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 0

Query:   21 DDGPPDEIVELGEFIHPCEDEMVYKLTNS--MVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEGGGG 120
            D+GPPDE+VE+G+ +H CE E+V KL++S   VPYFNAG +L+NK KIGKVDEI GP+N VMFTVK D GV A SF+  D V++GT KLLP+SRFT  GGGG
Sbjct:   34 DEGPPDEVVEIGKVMHECESELVCKLSHSESKVPYFNAGIFLENKKKIGKVDEIFGPINLVMFTVKMDPGVVAKSFEMEDVVYVGTDKLLPMSRFTSPGGGG 135

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
W2QPF8_PHYPN	1.180e-40	67.62	H/ACA ribonucleoprotein complex subunit n=8 Tax=Pe...	[more]
A0A2D4BHY5_PYTIN	1.300e-37	75.90	H/ACA ribonucleoprotein complex subunit n=2 Tax=Py...	[more]
A0A662WI78_9STRA	1.850e-37	74.12	H/ACA ribonucleoprotein complex subunit n=2 Tax=No...	[more]
A0A7S1UG96_9STRA	2.140e-37	60.19	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
B8BZE8_THAPS	5.840e-37	64.71	H/ACA ribonucleoprotein complex subunit n=1 Tax=Th...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 15..114 e-value: 3.0E-32 score: 111.5
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 24..114 e-value: 2.8E-36 score: 125.2
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 3..183
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 3..183
None	No IPR available	PRODOM	PD020235		coord: 30..113 e-value: 1.0E-25 score: 287.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 29..102

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig966	contig	F-serratus_M_contig966:51531..52584 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig966.20978.1	mRNA_F-serratus_M_contig966.20978.1	Fucus serratus male	mRNA	F-serratus_M_contig966 51486..53938 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig966.20978.1 ID=prot_F-serratus_M_contig966.20978.1|Name=mRNA_F-serratus_M_contig966.20978.1|organism=Fucus serratus male|type=polypeptide|length=185bp
MGGRFGARGGRGGRGGRGGYDDGPPDEIVELGEFIHPCEDEMVYKLTNSM
VPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKV
FIGTQKLLPVSRFTGEGGGGGGRSGGRGGGRGGGRGGGRGGGRGGRAGGR
GGFASPRGRGGMRGGRGGFSSSRGRGGSRGRGRF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR009000	Transl_B-barrel_sf