prot_F-serratus_M_contig966.20978.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig966.20978.1
Unique Name	prot_F-serratus_M_contig966.20978.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	185

Homology

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A225WG95_9STRA (H/ACA ribonucleoprotein complex subunit n=5 Tax=Phytophthora TaxID=4783 RepID=A0A225WG95_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.430e-41
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+ASSF++GDKVFI   KLLP++RFT
Sbjct:   36 EGPPSFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQAGDKVFISPDKLLPLARFT 128

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S3HT16_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT16_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.970e-41
Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG--GGG 120
            +++GPP E+ E G F+H  E E+V +LTN+MVPYFNAG Y++NK KIGKV+E+ GPV  + FT+KPDTGVNA+SFKSGDKVFIGT KLLP++RFT EG  GGG
Sbjct:   42 FEEGPPAELAEAGSFMHSAEGELVCRLTNAMVPYFNAGIYMENKAKIGKVEEVFGPVTKIYFTIKPDTGVNAASFKSGDKVFIGTDKLLPLARFTNEGKKGGG 144

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A3M6VHN5_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHN5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.210e-41
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  ++ELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SF++GDKVFI   KLLP+SRFT
Sbjct:   42 EGPPAFVIELGSFVHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSATSFQAGDKVFISPDKLLPLSRFT 134

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: G4ZSZ3_PHYSP (H/ACA ribonucleoprotein complex subunit n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZSZ3_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 2.630e-41
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+ASSF++GDKVFI   KLLP++RFT
Sbjct:   33 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQTGDKVFISPDKLLPLARFT 125

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: K8ZCA3_NANGC (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZCA3_NANGC)

HSP 1 Score: 145 bits (365), Expect = 2.980e-41
Identity = 63/96 (65.62%), Postives = 82/96 (85.42%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTG 115
            YD+GPP+++VE G F+H  E EM+ KLTN  +PYFNAG +L+NKT++GKV+E+LGP+N V FTVKPDTGV+A SFK+ DK++IGT KLLP+SRFTG
Sbjct:   36 YDEGPPEQVVEAGAFVHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTG 131

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A0W8CG70_PHYNI (H/ACA ribonucleoprotein complex subunit n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CG70_PHYNI)

HSP 1 Score: 145 bits (365), Expect = 4.570e-41
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SF +GDKV+I   KLLP+SRFT
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFT 128

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.800e-41
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0

Query:   30 ELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKV 100
            ELGEF+HPCEDEMVYKLTNSMVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNASSFK+ DK+
Sbjct:   44 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A484EGG2_BRELC (H/ACA ribonucleoprotein complex subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGG2_BRELC)

HSP 1 Score: 146 bits (368), Expect = 5.920e-41
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG ++H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPD+GV+ASSF++GDKVFI   KLLP+SRFT
Sbjct:   36 EGPPSFVVELGSYMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSASSFQAGDKVFISPDKLLPLSRFT 128

[Close]

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S2XQI5_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQI5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.420e-41
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 0

Query:   21 DDGPPDEIVELGEFIHPCEDEMVYKLT--NSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEGGGG 120
            D+GPPDE+VE+G+ IH CE EMV KLT  ++ +PYFNA  YL+NK KIGKVDEI GP+  VMFTVKPDTG+ ASSFK+ D V+IGT KLLP++RFT  GGGG
Sbjct:   44 DEGPPDEVVEVGQVIHECESEMVCKLTQADTKIPYFNANVYLENKKKIGKVDEIFGPITNVMFTVKPDTGIVASSFKAADAVYIGTDKLLPITRFTQPGGGG 145

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT)

HSP 1 Score: 148 bits (373), Expect = 7.910e-41
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+ASSF++GDKVFI   KLLP+SRFT
Sbjct:  110 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFT 202

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A225WG95_9STRA	1.430e-41	73.12	H/ACA ribonucleoprotein complex subunit n=5 Tax=Ph...	[more]
A0A7S3HT16_9STRA	1.970e-41	66.02	H/ACA ribonucleoprotein complex subunit n=1 Tax=Sp...	[more]
A0A3M6VHN5_9STRA	2.210e-41	72.04	H/ACA ribonucleoprotein complex subunit n=1 Tax=Pe...	[more]
G4ZSZ3_PHYSP	2.630e-41	73.12	H/ACA ribonucleoprotein complex subunit n=5 Tax=Ph...	[more]
K8ZCA3_NANGC	2.980e-41	65.63	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A0W8CG70_PHYNI	4.570e-41	72.04	H/ACA ribonucleoprotein complex subunit n=2 Tax=Ph...	[more]
D8LD14_ECTSI	4.800e-41	92.96	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A484EGG2_BRELC	5.920e-41	72.04	H/ACA ribonucleoprotein complex subunit n=1 Tax=Br...	[more]
A0A7S2XQI5_9STRA	6.420e-41	67.65	H/ACA ribonucleoprotein complex subunit n=1 Tax=At...	[more]
D0NS88_PHYIT	7.910e-41	74.19	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 15..114 e-value: 3.0E-32 score: 111.5
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 24..114 e-value: 2.8E-36 score: 125.2
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 3..183
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 3..183
None	No IPR available	PRODOM	PD020235		coord: 30..113 e-value: 1.0E-25 score: 287.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 29..102

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig966	contig	F-serratus_M_contig966:51531..52584 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig966.20978.1	mRNA_F-serratus_M_contig966.20978.1	Fucus serratus male	mRNA	F-serratus_M_contig966 51486..53938 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig966.20978.1 ID=prot_F-serratus_M_contig966.20978.1|Name=mRNA_F-serratus_M_contig966.20978.1|organism=Fucus serratus male|type=polypeptide|length=185bp
MGGRFGARGGRGGRGGRGGYDDGPPDEIVELGEFIHPCEDEMVYKLTNSM
VPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKV
FIGTQKLLPVSRFTGEGGGGGGRSGGRGGGRGGGRGGGRGGGRGGRAGGR
GGFASPRGRGGMRGGRGGFSSSRGRGGSRGRGRF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR009000	Transl_B-barrel_sf