prot_F-serratus_M_contig964.20965.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig964.20965.1
Unique Nameprot_F-serratus_M_contig964.20965.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length216
Homology
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 3.950e-44
Identity = 84/211 (39.81%), Postives = 129/211 (61.14%), Query Frame = 0
Query:    6 KIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK 216
            K  ++GKI+  K R VA+GF Q+  +      SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +K   K++G+ +++ GC I R+     L+  Q  Y++SM++RFDVK
Sbjct:  382 KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVK 591          
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 167 bits (423), Expect = 4.230e-44
Identity = 86/213 (40.38%), Postives = 134/213 (62.91%), Query Frame = 0
Query:    2 LYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDD--ILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKR 212
            ++K K G DG++EKYK RLVAQGF QVEG+ Y E ++P   + SIR+LLA AA  D E+   D + AFL  +++EEIY+++P   +    AV RL KA+YGL QA R W  K   ++  +GF + +AD CVF K +D     ++ V+VDD  +L+D+ D  T  +  ++LG +  + D+G+  + +   +TRNR+ R ++  Q  Y+E +++R
Sbjct: 1044 VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPP-IIAVYVDDNMVLSDSLDLVT--KTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILER 1253          
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.690e-44
Identity = 86/210 (40.95%), Postives = 127/210 (60.48%), Query Frame = 0
Query:    6 KIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 215
            K  ++GKI+ +K RLVA+GF Q+  V Y    S  PS+AS +++LA A  K     H D +QA+  A +DEE++++ P    E    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +K   +++G+ E++ GC I R+ +   LK  Q  Y++SM+KRFDV
Sbjct:  521 KTNKEGKIDTFKARLVARGFPQIPNVDYFHSSSACPSSASNKLMLAVANEKGVNFNHSDVKQAYTHATLDEEVFLKRPAGCGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDV 729          
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 163 bits (412), Expect = 5.190e-44
Identity = 84/216 (38.89%), Postives = 133/216 (61.57%), Query Frame = 0
Query:    2 LYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFP--GAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 215
            +YK+KIG DGK+E YK RLVA+G+ Q EG+ Y E +SP     SIR+LLA AA  D E+   D + AFL  ++ EE+Y+  PE F        V +L ++IYGL QA R WN +F + +    F + + +PCV++K+  G + + +V++VDDIL    D  ++      L ++  +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+++
Sbjct:  142 VYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNM 356          
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.430e-44
Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 0
Query:    6 KIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESM 209
            K  ++GKI+ +K RLVA+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD    M++V++VDDIL    D+   +   A L +K   K++G+ E++ GC I R+ +   L+  Q  Y++SM
Sbjct:  591 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSM 793          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQN6_9PHAE3.950e-4439.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK4.230e-4440.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JBN2_9PHAE4.690e-4440.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3MAN7_TRIPR5.190e-4438.89Retrotransposon protein putative Ty1-copia subclas... [more]
A0A6H5JTV6_9PHAE5.430e-4440.69Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..215
e-value: 6.9E-48
score: 163.4
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 4..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig964contigF-serratus_M_contig964:206630..207277 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig964.20965.1mRNA_F-serratus_M_contig964.20965.1Fucus serratus malemRNAF-serratus_M_contig964 206618..207277 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig964.20965.1 ID=prot_F-serratus_M_contig964.20965.1|Name=mRNA_F-serratus_M_contig964.20965.1|organism=Fucus serratus male|type=polypeptide|length=216bp
MLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLL
ATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAI
YGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVD
DILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKF
DQHLYVESMIKRFDVK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2