prot_F-serratus_M_contig962.20957.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig962.20957.1
Unique Nameprot_F-serratus_M_contig962.20957.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length318
Homology
BLAST of mRNA_F-serratus_M_contig962.20957.1 vs. uniprot
Match: A0A5D6XZC6_9STRA (MPN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZC6_9STRA)

HSP 1 Score: 246 bits (628), Expect = 2.660e-77
Identity = 140/275 (50.91%), Postives = 178/275 (64.73%), Query Frame = 0
Query:   46 VKVHPMVLFSVLDHYLRRPESQKRVIGTLLGTVSANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNSRESVVGWYATSYDGV-----LIVDDSSLIHDFYTGECARPVHLVVDTALKNNVVGCKGFISTPLEIAGVALANVFHEVSVSMVSTEAERICIDRMVKGQEEPFSDPEGLAEVDSKMASLETSMQRLLGMLQQAEEYVATVVEGKLPADPHMGRKLADTLAAVPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKL 315
            VKVHP+V+F +LD  LRR + Q+RVIGTLLG V   V E+TNSFAVPHLE  DEVAVGKDF+  M  L QRVN  E VVGWYAT+ DG+     L+ + S LIH+FY      PVHLVVDT+L+ + +    F+STPLE A  AL N  H    +M   E E                D E  A + +++A+LE S++RL   L  AE YV  VV GKLPAD  +GR++AD LA++P +R + F+++F   LQDLLMVSYLS LT+ QL++AEKL
Sbjct:   16 VKVHPVVIFQILDRALRRADEQERVIGTLLGRVENGVAEVTNSFAVPHLENGDEVAVGKDFHTQMYELHQRVNEGEVVVGWYATTLDGLAPGAPLVDEHSCLIHEFYGSVAEMPVHLVVDTSLRADQLQVSAFVSTPLEAAESALVN--H----AMAPKENE----------------DEEESAALPTELAALEASIERLYQCLSSAEAYVGEVVSGKLPADAKVGREIADALASIPAIRQDQFDQIFSSGLQDLLMVSYLSGLTQAQLSMAEKL 268          
BLAST of mRNA_F-serratus_M_contig962.20957.1 vs. uniprot
Match: A0A1V9ZQ61_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ61_9STRA)

HSP 1 Score: 266 bits (679), Expect = 7.640e-77
Identity = 144/273 (52.75%), Postives = 193/273 (70.70%), Query Frame = 0
Query:   45 VVKVHPMVLFSVLDHYLRRPESQKRVIGTLLGTVSAN--VVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNSRESVVGWYATSYDGVLIVDDSSLIHDFYTGECARPVHLVVDTALKNNVVGCKGFISTPLEIAGVALANVFHEVSVSMVSTEAERICIDRMVKGQEEPFSDPEGLAEVDSKMASLETSMQRLLGMLQQAEEYVATVVEGKLPADPHMGRKLADTLAAVPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKL 315
            +V VHP+V+F VLD +LRR E QKRVIGTLLG V A   VV ITNSF VPHLEK DEVAVGKD+++ ML L QRVN  E VVGWYATS D   I ++S LIHDFY+ EC  PVH+VV+T+L ++ +    F S+ L++A VALAN F +V V   + EAE I ++ M K   E  + P       S + +LE +++RL  +L ++ EYV  V+ GK  A+P +GR+LA+ +A++P MR + F+++F++ +QDLLMVSYLSSLT+ QL+IAEKL
Sbjct: 1532 LVHVHPVVVFQVLDRFLRRAEDQKRVIGTLLGLVDAEHGVVTITNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATSSDSEPINENSCLIHDFYSSECPSPVHVVVNTSLASDSLNLMAFTSSALQVADVALANQFKQVKVETKTYEAEAIALNLMAKRSTEATTLP-------SDLEALEMAIERLHELLAKSAEYVGNVIAGKEVANPKLGRELAEAVASIPPMRSDLFDQIFNNGMQDLLMVSYLSSLTQAQLSIAEKL 1797          
BLAST of mRNA_F-serratus_M_contig962.20957.1 vs. uniprot
Match: D0NBC1_PHYIT (Eukaryotic translation initiation factor 3 subunit F n=16 Tax=Phytophthora TaxID=4783 RepID=D0NBC1_PHYIT)

HSP 1 Score: 243 bits (620), Expect = 5.530e-76
Identity = 131/270 (48.52%), Postives = 175/270 (64.81%), Query Frame = 0
Query:   46 VKVHPMVLFSVLDHYLRRPESQKRVIGTLLGTVSANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNSRESVVGWYATSYDGVLIVDDSSLIHDFYTGECARPVHLVVDTALKNNVVGCKGFISTPLEIAGVALANVFHEVSVSMVSTEAERICIDRMVKGQEEPFSDPEGLAEVDSKMASLETSMQRLLGMLQQAEEYVATVVEGKLPADPHMGRKLADTLAAVPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKL 315
            VK+HP+V+  VLD  LRR E+Q+RVIGTLLG V   V E+TNSFAVPHLE  DEVAVG+DF+  M  L QRVN  E VVGWYA   +   + D S+LIH FY   C  PVHLVVDT+L+N+ +    ++S PLE+   AL N F ++ V+   +E E I ++ M      P         +  ++ +LE +M++L   +  A  +V  VV GK  AD  +GR++AD LAA+P +R E F++LF+  LQDLLMVSYLS LT+ QL++AEKL
Sbjct:   14 VKLHPVVVLQVLDRSLRRAENQERVIGTLLGRVEGGVAEVTNSFAVPHLENGDEVAVGRDFHTHMYELHQRVNEGEVVVGWYAAGPNR--LDDHSALIHQFYNSVCELPVHLVVDTSLQNDKLDVSAYVSAPLEVVDTALVNQFKQIPVTQKVSEPEAIALNAMA-----PKDGENKAVALPKELEALEETMEQLYKCIDGASLFVGDVVAGKQTADAKLGREIADALAAIPMLREEQFDQLFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276          
BLAST of mRNA_F-serratus_M_contig962.20957.1 vs. uniprot
Match: A0A2R5FZB4_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZB4_9STRA)

HSP 1 Score: 243 bits (619), Expect = 2.000e-75
Identity = 133/278 (47.84%), Postives = 188/278 (67.63%), Query Frame = 0
Query:   45 VVKVHPMVLFSVLDHYLRRPESQKRVIGTLLGTVSAN-VVEITNSFAVPHLEKNDE-VAVGKDFNKSMLALQQRVNSRESVVGWYATSY-DGVLIVDDSSLIHDFYTGECARPVHLVVDTALKNNVVGCKGFISTPLEIAGVALANVFHEVSVSMVSTEAERICIDRMVKGQEEPFSDPEGLAE---VDSKMASLETSMQRLLGMLQQAEEYVATVVEGKLPADPHMGRKLADTLAAVPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKLS 316
            VVK+HP+VLF++LDH++ R E Q+RVIGTLLGT +A   + + N F VPH+E+ DE VAVGKD+ + ML L ++VNS E V+GWYAT+   GVLI   S LI DFY+ EC  P+H+VVDT+L NNV+G K F+S  +++    LA  F ++ V + ++E ERI +D M+K  +  F   + L +   +++++ +LE SM RLL ML+    YV  VV  +   D   G K+A  ++ VPR+ P  F + F  NLQDLLMV YLS+LTRTQLA+AE+++
Sbjct:   27 VVKMHPVVLFAILDHFIHRNEGQQRVIGTLLGTRTATGQLVVKNCFPVPHVEQGDEEVAVGKDYLQQMLDLHRQVNSNEEVLGWYATTPGQGVLINQQSCLIQDFYSAECGDPLHVVVDTSLANNVLGVKAFMSETVKLGESVLAASFVQLKVELQASEKERIGLDLMIKASKSRFDQSQQLQDSKQINTEVENLEQSMTRLLTMLENVSAYVDDVVAKRKTPDYKTGSKIASVISMVPRIEPAVFEKSFRSNLQDLLMVVYLSNLTRTQLAVAERIA 304          
BLAST of mRNA_F-serratus_M_contig962.20957.1 vs. uniprot
Match: A0A812X8J9_SYMMI (TIF3F1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X8J9_SYMMI)

HSP 1 Score: 241 bits (614), Expect = 6.280e-75
Identity = 122/274 (44.53%), Postives = 182/274 (66.42%), Query Frame = 0
Query:   46 VKVHPMVLFSVLDHYLRRPESQKRVIGTLLGTVSANVVEITNSFAVPHLEKNDEV--AVGKDFNKSMLALQQRVNSRESVVGWYATSYDGVLIVDDSSLIHDFYTGECARPVHLVVDTALKNNVVGCKGFISTPLEIAGVALANVFHEVSVSMVSTEAERICIDRMVKGQEEP--FSDPEGLAEVDSKMASLETSMQRLLGMLQQAEEYVATVVEGKLPADPHMGRKLADTLAAVPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKL 315
            VK+H   +FS+L+ ++RR +   RVIGTLLG      + +T+ FAVPH+E+NDEV  A+ KD++KSM A+ +R+N +E ++GWY T  +G L+ D+SSLIH+FY+ EC+ PVHLVVD +L  + +  + FIS  + +   ALAN+F EV V +  + AE  C++ M+ GQE+   FS PE L+ + S  A L +S++RL+G++ +   YV  V  G    D  +G  +AD L+++  + P+ F R  D   QD+LMVSYLS+LT+ QLA+AEKL
Sbjct:   13 VKLHATAVFSILNSHIRREDRSSRVIGTLLGFKQDGCINVTDCFAVPHMERNDEVYVAINKDYHKSMYAMHKRINRKELIIGWYTTVPEGSLLTDNSSLIHEFYSHECSDPVHLVVDASLTESDINIRAFISKAMVVGENALANMFQEVHVELCLSPAETTCLNHMISGQEQDSTFSSPEMLSSIPSVPADLTSSLRRLVGLVDKISAYVDEVAAGTREPDAQIGIMIADVLSSLQVVGPDDFQRYMDAKTQDMLMVSYLSNLTKAQLAVAEKL 286          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig962.20957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6XZC6_9STRA2.660e-7750.91MPN domain-containing protein n=1 Tax=Pythium bras... [more]
A0A1V9ZQ61_9STRA7.640e-7752.75Eukaryotic translation initiation factor 3 subunit... [more]
D0NBC1_PHYIT5.530e-7648.52Eukaryotic translation initiation factor 3 subunit... [more]
A0A2R5FZB4_9STRA2.000e-7547.84Eukaryotic translation initiation factor 3 subunit... [more]
A0A812X8J9_SYMMI6.280e-7544.53TIF3F1 protein n=1 Tax=Symbiodinium microadriaticu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 230..250
NoneNo IPR availableGENE3D3.40.140.10coord: 39..217
e-value: 3.0E-46
score: 158.9
NoneNo IPR availablePANTHERPTHR10540EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATEDcoord: 39..316
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 45..178
e-value: 7.5E-22
score: 88.6
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 45..147
e-value: 1.6E-21
score: 76.5
IPR024969Rpn11/EIF3F, C-terminalPFAMPF13012MitMem_regcoord: 200..315
e-value: 5.0E-22
score: 78.4
IPR027531Eukaryotic translation initiation factor 3 subunit FPANTHERPTHR10540:SF6EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Fcoord: 39..316
IPR027531Eukaryotic translation initiation factor 3 subunit FHAMAPMF_03005eIF3fcoord: 44..317
score: 34.045
IPR037518MPN domainPROSITEPS50249MPNcoord: 46..179
score: 24.243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig962contigF-serratus_M_contig962:237582..243866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig962.20957.1mRNA_F-serratus_M_contig962.20957.1Fucus serratus malemRNAF-serratus_M_contig962 237054..244868 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig962.20957.1 ID=prot_F-serratus_M_contig962.20957.1|Name=mRNA_F-serratus_M_contig962.20957.1|organism=Fucus serratus male|type=polypeptide|length=318bp
MSRGRGSGSMLVLNDPAAQISSAEGTTQAAPMVDLSAFASRNDLVVKVHP
MVLFSVLDHYLRRPESQKRVIGTLLGTVSANVVEITNSFAVPHLEKNDEV
AVGKDFNKSMLALQQRVNSRESVVGWYATSYDGVLIVDDSSLIHDFYTGE
CARPVHLVVDTALKNNVVGCKGFISTPLEIAGVALANVFHEVSVSMVSTE
AERICIDRMVKGQEEPFSDPEGLAEVDSKMASLETSMQRLLGMLQQAEEY
VATVVEGKLPADPHMGRKLADTLAAVPRMRPEAFNRLFDDNLQDLLMVSY
LSSLTRTQLAIAEKLST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
IPR024969Rpn11/EIF3F_C
IPR027531eIF3f
IPR037518MPN