prot_F-serratus_M_contig960.20936.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig960.20936.1
Unique Name	prot_F-serratus_M_contig960.20936.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	522

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot
Match: A0A0W8CPQ7_PHYNI (Transcription factor Dp-1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CPQ7_PHYNI)

HSP 1 Score: 206 bits (525), Expect = 7.350e-59
Identity = 111/231 (48.05%), Postives = 159/231 (68.83%), Query Frame = 0

Query:  267 NKGLRHFSVKVCRKVEEKGSTSYNEVADELVRELASEGDYGGRKDAQYDDKNIRRRVYDALNVLMAIDIISKDRKEIKWKGLPESARSGLGALQREKHDLERSLDKKKDQLSELLVQQIAFRNLARRNRLQSAPRAAGGEGVAKNAEDLAASKIHMPFIVVSSSNDTVIQCEMAENREDVFFNFSHEFQIADDNEILKRLGMHKCRKQDLPNLLARELIPQVPEDILIQED 497
            NKGLRHFS+KVC+KVEEK  TSYNEVADELVRE  +        DA YD+KNIRRRV DALNVLMA+DIISK+RKEI+WKGLP + +     L  E+++  +S+++KK  L +LLVQQ+A +NL +RN  +    +          ++    ++ +PFI V++S DTVIQCEM+E+R+D+FFNFS  F+I DD +IL++L +HK    +L  ++  +L+  +P +  ++ +
Sbjct:   86 NKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRP----NDAVYDEKNIRRRVXDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNADRKRKESENPTSATIVRDE---GRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKAPYAELKQMVPDKLLSYLPAECEMKSE 309

[Close]

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot
Match: A0A3M6VP34_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP34_9STRA)

HSP 1 Score: 209 bits (531), Expect = 9.870e-59
Identity = 112/231 (48.48%), Postives = 160/231 (69.26%), Query Frame = 0

Query:  267 NKGLRHFSVKVCRKVEEKGSTSYNEVADELVRELASEGDYGGRKDAQYDDKNIRRRVYDALNVLMAIDIISKDRKEIKWKGLPESARSGLGALQREKHDLERSLDKKKDQLSELLVQQIAFRNLARRNRLQSAPRAAGGEGVAKNAEDLAASKIHMPFIVVSSSNDTVIQCEMAENREDVFFNFSHEFQIADDNEILKRLGMHKCRKQDLPNLLARELIPQVPEDILIQED 497
            NKGLRHFS+KVC+KVEEK  TSYNEVADELVRE  +        D+ YD+KNIRRRVYDALNVLMA+DIISK+RKEI+WKGLP + +     L  E+++  +S+++KK  L +LLVQQ+A +NL +RN  +    +     V    ++    ++ +PFI V++S DTVIQCEM+E+R+D+FFNFS  F+I DD +IL +L +HK    +L  ++  +L+  +P +  ++ +
Sbjct:  170 NKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRP----NDSVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPANLQHDTEMLMAERNERIKSVEQKKQHLQDLLVQQVAMKNLLKRNAERKRKESENPTSVNIIRDE---GRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILHKLNLHKAPYAELKQMVPDKLLSYLPAECEMKSE 393

[Close]

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot
Match: A0A484DX97_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DX97_BRELC)

HSP 1 Score: 209 bits (531), Expect = 1.070e-58
Identity = 115/238 (48.32%), Postives = 159/238 (66.81%), Query Frame = 0

Query:  267 NKGLRHFSVKVCRKVEEKGSTSYNEVADELVRELASEGDYGGRKDAQYDDKNIRRRVYDALNVLMAIDIISKDRKEIKWKGLPESARSGLGALQREKHDLERSLDKKKDQLSELLVQQIAFRNLARRNRLQSAPRAAGGEGVAKNAEDLAAS-------KIHMPFIVVSSSNDTVIQCEMAENREDVFFNFSHEFQIADDNEILKRLGMHKCRKQDLPNLLARELIPQVPEDILIQED 497
            NKGLRHFS+KVC+KVEEK  TSYNEVADELV E  +        D+ YD+KNIRRRVYDALNVLMA+DIISK+RKEI+WKGLP + +     L  E+++  +S+ +KK  L +LLVQQ+A +NL +RN           E   K  ED A +       ++ +PFI V++S DTVIQCEM+E+R+D+FFNFS  F+I DD +IL++L +HK     L +++   L+  +P +  ++ +
Sbjct:  173 NKGLRHFSMKVCQKVEEKHVTSYNEVADELVLEFVTMRP----NDSVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLMAERNERMKSVKQKKQHLQDLLVQQVAMKNLLKRN----------AERKRKECEDSAGATIVRDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKATYASLKHMVPGNLLSYLPAECELKSE 396

[Close]

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot
Match: A0A7S2YJ80_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJ80_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.280e-58
Identity = 120/230 (52.17%), Postives = 158/230 (68.70%), Query Frame = 0

Query:  259 AKPSKSLPNKGLRHFSVKVCRKVEEKGSTSYNEVADELVRELASEGDYGGRKD---AQYDDKNIRRRVYDALNVLMAIDIISKDRKEIKWKGLPESARSGLGALQREKHDLERSLDKKKDQLSELLVQQIAFRNLARRNRLQSAPRAAGGEGVAKNAEDLAASKIHMPFIVVSSSNDTVIQCEMAENREDVFFNFSHEFQIADDNEILKRLGMHKCRKQDLPNLLARELI 485
            A  S + P KGLRHFS+ VC+KVEEKG TSYNEVADELV+++  E     RK+   +++D+KNIRRRVYDALNVLMA+DII+K++K I WKGLP SA + L  LQREK    + +++KK+ L ELLVQQ+ FRNL   N      R +G      +A+D    KI +PFIVV++ +  VIQC M+ +  DV F+FS  F+I DDN ILKRLGMHK  ++ L  +L  +L+
Sbjct:  127 ASTSSAKPYKGLRHFSMMVCKKVEEKGVTSYNEVADELVQQVVVER----RKEDPNSKFDEKNIRRRVYDALNVLMAMDIITKEKKAISWKGLPTSAHADLDMLQREKEHRLQEVERKKEALRELLVQQVCFRNLVALNY----DRNSGPVAADPSAKD---HKIPLPFIVVNTHSSAVIQCNMSRDLTDVMFDFSQPFEINDDNTILKRLGMHKTDRETLQEMLPEDLL 345

[Close]

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot
Match: A0A225X021_9STRA (Transcription factor Dp-1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X021_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.070e-58
Identity = 117/245 (47.76%), Postives = 164/245 (66.94%), Query Frame = 0

Query:  267 NKGLRHFSVKVCRKVEEKGSTSYNEVADELVREL-------ASEGDYGGRKDAQYDDKNIRRRVYDALNVLMAIDIISKDRKEIKWKGLPESARSGLGALQREKHDLERSLDKKKDQLSELLVQQIAFRNLARRNRLQSAPRAAGGEGVAKNAEDLAAS-------KIHMPFIVVSSSNDTVIQCEMAENREDVFFNFSHEFQIADDNEILKRLGMHKCRKQDLPNLLARELIPQVPEDILIQED 497
            NKGLRHFS+KVC+KVEEK  TSYNEVADELVRE        ++     G     YD+KNIRRRVYDALNVLMA+DIISK+RKEI+WKGLP + +     L  E+++  +S+++KK  L +LLVQQ+A +NL +RN           E   K +E+ A++       ++ +PFI V++S DTVIQCEM+E+R+D+FFNFS  F+I DD +IL+RL +HK    +L  ++  +L+  +P +  ++ D
Sbjct:  151 NKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRPNDSANTHVDGYPFQVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNT----------ERKRKESENPASAPIVRDEGRVFLPFIAVNTSIDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQRLNLHKAPYAELKQMVPDKLLSYLPAECEMKSD 385

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig960.20936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0W8CPQ7_PHYNI	7.350e-59	48.05	Transcription factor Dp-1 n=2 Tax=Phytophthora Tax...	[more]
A0A3M6VP34_9STRA	9.870e-59	48.48	Uncharacterized protein n=2 Tax=Peronospora effusa...	[more]
A0A484DX97_BRELC	1.070e-58	48.32	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A7S2YJ80_9STRA	1.280e-58	52.17	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A225X021_9STRA	3.070e-58	47.76	Transcription factor Dp-1 n=1 Tax=Phytophthora meg...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 356..383
IPR003316	E2F/DP family, winged-helix DNA-binding domain	SMART	SM01372	E2F_TDP_2	coord: 265..347 e-value: 1.9E-28 score: 110.5
IPR003316	E2F/DP family, winged-helix DNA-binding domain	PFAM	PF02319	E2F_TDP	coord: 267..347 e-value: 2.6E-23 score: 81.8
IPR014889	Transcription factor DP, C-terminal	SMART	SM01138	DP_2	coord: 354..499 e-value: 2.9E-28 score: 109.9
IPR014889	Transcription factor DP, C-terminal	PFAM	PF08781	DP	coord: 358..470 e-value: 2.3E-26 score: 92.3
IPR038168	Transcription factor DP, C-terminal domain superfamily	GENE3D	1.20.140.80		coord: 354..498 e-value: 7.4E-35 score: 121.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 260..353 e-value: 1.1E-35 score: 123.4
IPR015648	Transcription factor DP	PANTHER	PTHR12548	TRANSCRIPTION FACTOR DP	coord: 244..479
IPR037241	E2F-DP heterodimerization region	SUPERFAMILY	144074	E2F-DP heterodimerization region	coord: 359..486
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 268..348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig960	contig	F-serratus_M_contig960:233837..248244 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig960.20936.1	mRNA_F-serratus_M_contig960.20936.1	Fucus serratus male	mRNA	F-serratus_M_contig960 233562..249726 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig960.20936.1 ID=prot_F-serratus_M_contig960.20936.1|Name=mRNA_F-serratus_M_contig960.20936.1|organism=Fucus serratus male|type=polypeptide|length=522bp
MRKAEGRIQEEGLPSFMLPSDATSPTPFALDSTRLWDEGEEKSGSKRKHE
DTLNDEFLAMLKDAGLENMALEVGTVQGGQIAALNSSKEGSEGKMSRPFS
PGDASSPVAMTASAIFSPNPRGIGPPRESPLLLRRSLGSPAPPESMTAAA
IFSPGAGGEVLSYLAESPAAIKGTDLRLAASAESVTPYNPHPRVKRARKS
LAPPAPPRDISPPEPVPPPPPRDRRKRRACRKTGSESLTNTGCVREVSMK
RVKKQVKDAKPSKSLPNKGLRHFSVKVCRKVEEKGSTSYNEVADELVREL
ASEGDYGGRKDAQYDDKNIRRRVYDALNVLMAIDIISKDRKEIKWKGLPE
SARSGLGALQREKHDLERSLDKKKDQLSELLVQQIAFRNLARRNRLQSAP
RAAGGEGVAKNAEDLAASKIHMPFIVVSSSNDTVIQCEMAENREDVFFNF
SHEFQIADDNEILKRLGMHKCRKQDLPNLLARELIPQVPEDILIQEDGDR
GGSSSSQPSSPVSSCSEYAPS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003316	E2F_WHTH_DNA-bd_dom
IPR014889	Transc_factor_DP_C
IPR038168	TF_DP_C_sf
IPR036388	WH-like_DNA-bd_sf
IPR015648	Transcrpt_fac_DP
IPR037241	E2F-DP_heterodim
IPR036390	WH_DNA-bd_sf