prot_F-serratus_M_contig96.20921.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig96.20921.1
Unique Nameprot_F-serratus_M_contig96.20921.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length95
Homology
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BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 n=124 Tax=Euteleostomi TaxID=117571 RepID=LSM2_HUMAN)

HSP 1 Score: 145 bits (367), Expect = 1.070e-43
Identity = 65/94 (69.15%), Postives = 83/94 (88.30%), Query Frame = 0 
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE+ Q K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQK 94
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BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A2U9C6S1_SCOMX (U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=root TaxID=1 RepID=A0A2U9C6S1_SCOMX)

HSP 1 Score: 145 bits (367), Expect = 1.070e-43
Identity = 65/94 (69.15%), Postives = 83/94 (88.30%), Query Frame = 0 
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE+ Q K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAIQQK 94
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BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: H2XSZ1_CIOIN (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XSZ1_CIOIN)

HSP 1 Score: 145 bits (365), Expect = 2.150e-43
Identity = 64/94 (68.09%), Postives = 82/94 (87.23%), Query Frame = 0 
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D E+YP + ++KNCF+RGSVVRY+Q+P+ +VDT LLQDA RKE+ Q K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFVRGSVVRYVQLPADEVDTGLLQDAARKEAVQSK 94
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BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A2K6VTT6_ONCVO (U6 snRNA-associated Sm-like protein LSm2 n=14 Tax=Spirurina TaxID=6274 RepID=A0A2K6VTT6_ONCVO)

HSP 1 Score: 145 bits (366), Expect = 2.180e-43
Identity = 66/94 (70.21%), Postives = 82/94 (87.23%), Query Frame = 0 
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D+ERYP + ++KNCFIRGSVVRY+Q+P+  VDT+LLQDA RKE  Q K
Sbjct:    9 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNCFIRGSVVRYVQLPADQVDTQLLQDASRKEVMQAK 102
[Close]
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A0L8FKG7_OCTBM (U6 snRNA-associated Sm-like protein LSm2 n=12 Tax=Bilateria TaxID=33213 RepID=A0A0L8FKG7_OCTBM)

HSP 1 Score: 145 bits (365), Expect = 2.220e-43
Identity = 64/94 (68.09%), Postives = 83/94 (88.30%), Query Frame = 0 
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQ+LN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ + DT+LLQDA RKE+AQ K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADECDTQLLQDAARKEAAQNK 94
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LSM2_HUMAN1.070e-4369.15U6 snRNA-associated Sm-like protein LSm2 n=124 Tax... [more]
A0A2U9C6S1_SCOMX1.070e-4369.15U6 snRNA-associated Sm-like protein LSm2 n=5 Tax=r... [more]
H2XSZ1_CIOIN2.150e-4368.09U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A2K6VTT6_ONCVO2.180e-4370.21U6 snRNA-associated Sm-like protein LSm2 n=14 Tax=... [more]
A0A0L8FKG7_OCTBM2.220e-4368.09U6 snRNA-associated Sm-like protein LSm2 n=12 Tax=... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 5.8E-16
score: 69.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..71
e-value: 7.4E-16
score: 57.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..94
e-value: 2.4E-46
score: 153.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..94
NoneNo IPR availableGENE3D2.30.30.100coord: 1..94
e-value: 3.4E-35
score: 121.6
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:693213..707350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20921.1mRNA_F-serratus_M_contig96.20921.1Fucus serratus malemRNAF-serratus_M_contig96 693060..708085 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig96.20921.1 ID=prot_F-serratus_M_contig96.20921.1|Name=mRNA_F-serratus_M_contig96.20921.1|organism=Fucus serratus male|type=polypeptide|length=95bp
MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAER
YPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf