prot_F-serratus_M_contig96.20921.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig96.20921.1
Unique Nameprot_F-serratus_M_contig96.20921.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length95
Homology
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A7S4K237_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K237_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.330e-45
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESA 91
            MLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +V VVD  RYPQL  + N F+RGSVVRYIQIP+ DVDTELLQDA RKE+A
Sbjct:    3 MLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVSVVDKGRYPQLLTLNNVFVRGSVVRYIQIPAGDVDTELLQDAARKENA 93          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A4Y2HP66_ARAVE (U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=Arthropoda TaxID=6656 RepID=A0A4Y2HP66_ARAVE)

HSP 1 Score: 148 bits (374), Expect = 9.130e-45
Identity = 66/94 (70.21%), Postives = 84/94 (89.36%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE+AQ K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAAQSK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A067CRV3_SAPPC (U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRV3_SAPPC)

HSP 1 Score: 148 bits (373), Expect = 1.460e-44
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFKTLVGKE+AVELKNDVAL GTLHSVDQYLN KL DV VV+  +YPQL  +KNCFIRGSVVRYIQI  +DVDTELLQDA R+E++  K
Sbjct:    1 MLFYSFFKTLVGKEVAVELKNDVALVGTLHSVDQYLNFKLVDVTVVEEHKYPQLMNMKNCFIRGSVVRYIQIAKADVDTELLQDAARREASANK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A8J2SX90_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX90_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.730e-44
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQ 92
            MLFYS FKTLVGKEIAVELKNDVALTGTLHS+DQYLN+KL D +VVDA R+PQL A+ + F+RGSVVRY+Q+P++DVD ELLQDACRK S +
Sbjct:    1 MLFYSMFKTLVGKEIAVELKNDVALTGTLHSIDQYLNIKLLDARVVDAARHPQLVAVSSVFVRGSVVRYVQLPAADVDAELLQDACRKASVK 92          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: B8BUU1_THAPS (Sm domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUU1_THAPS)

HSP 1 Score: 147 bits (371), Expect = 2.780e-44
Identity = 71/90 (78.89%), Postives = 83/90 (92.22%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESA 91
            LF+SFFKTLVGKEIAVELKNDV LTGTLHSVDQYLN+KLT+V VV+ ++YPQL ++KNCFIRGSVVRY+QI  +DVDTELLQDA RKE++
Sbjct:    2 LFFSFFKTLVGKEIAVELKNDVVLTGTLHSVDQYLNIKLTNVSVVNQDKYPQLMSLKNCFIRGSVVRYVQINPNDVDTELLQDATRKENS 91          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A087UJZ7_STEMI (U6 snRNA-associated Sm-like protein LSm2 (Fragment) n=3 Tax=Bilateria TaxID=33213 RepID=A0A087UJZ7_STEMI)

HSP 1 Score: 147 bits (370), Expect = 3.720e-44
Identity = 65/94 (69.15%), Postives = 83/94 (88.30%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHS DQYLN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE+AQ K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSADQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAAQSK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: Q5BL46_XENTR (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Euteleostomi TaxID=117571 RepID=Q5BL46_XENTR)

HSP 1 Score: 146 bits (368), Expect = 7.510e-44
Identity = 65/94 (69.15%), Postives = 83/94 (88.30%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE+ Q K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAVQQK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: UPI001884BD19 (LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm2 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=UPI001884BD19)

HSP 1 Score: 146 bits (368), Expect = 1.020e-43
Identity = 63/93 (67.74%), Postives = 84/93 (90.32%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            LFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V+D ++YP + ++KNCFIRGSVVRY+Q+P+ ++DT+LLQDA RKE+ QGK
Sbjct:   12 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVIDQDKYPHMLSVKNCFIRGSVVRYVQLPADEIDTQLLQDATRKEAQQGK 104          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: F0W757_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=Albugo TaxID=65356 RepID=F0W757_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.030e-43
Identity = 69/94 (73.40%), Postives = 83/94 (88.30%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFKTLVGKE+AVELKNDVAL GTLHSVDQYLN+KL  V VV++++YPQL  +KNCFIRGSV+RY+QIP+ +VDT+LLQDA R+E+   K
Sbjct:    1 MLFYSFFKTLVGKEVAVELKNDVALMGTLHSVDQYLNMKLMGVSVVESDKYPQLMNMKNCFIRGSVIRYVQIPAQEVDTDLLQDAARREANANK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: F7BWI8_MONDO (U6 snRNA-associated Sm-like protein LSm2 n=99 Tax=Gnathostomata TaxID=7776 RepID=F7BWI8_MONDO)

HSP 1 Score: 145 bits (367), Expect = 1.070e-43
Identity = 65/94 (69.15%), Postives = 83/94 (88.30%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFK+LVGK++ VELKND+++ GTLHSVDQYLN+KLTD+ V D E+YP + ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE+ Q K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQK 94          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4K237_9STRA6.330e-4581.32Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A4Y2HP66_ARAVE9.130e-4570.21U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=A... [more]
A0A067CRV3_SAPPC1.460e-4477.66U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=S... [more]
A0A8J2SX90_9STRA1.730e-4476.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8BUU1_THAPS2.780e-4478.89Sm domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A087UJZ7_STEMI3.720e-4469.15U6 snRNA-associated Sm-like protein LSm2 (Fragment... [more]
Q5BL46_XENTR7.510e-4469.15U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=E... [more]
UPI001884BD191.020e-4367.74LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like p... [more]
F0W757_9STRA1.030e-4373.40U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=A... [more]
F7BWI8_MONDO1.070e-4369.15U6 snRNA-associated Sm-like protein LSm2 n=99 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 5.8E-16
score: 69.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..71
e-value: 7.4E-16
score: 57.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..94
e-value: 2.4E-46
score: 153.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..94
NoneNo IPR availableGENE3D2.30.30.100coord: 1..94
e-value: 3.4E-35
score: 121.6
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:693213..707350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20921.1mRNA_F-serratus_M_contig96.20921.1Fucus serratus malemRNAF-serratus_M_contig96 693060..708085 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig96.20921.1 ID=prot_F-serratus_M_contig96.20921.1|Name=mRNA_F-serratus_M_contig96.20921.1|organism=Fucus serratus male|type=polypeptide|length=95bp
MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAER
YPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf