prot_F-serratus_M_contig96.20921.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig96.20921.1
Unique Nameprot_F-serratus_M_contig96.20921.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length95
Homology
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 9.940e-60
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPS+DVDTELLQDACRKESAQGK
Sbjct:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.290e-51
Identity = 80/93 (86.02%), Postives = 88/93 (94.62%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQG 93
            MLFYSFFKTLVGKE+AVELKNDV+LTGTLHSVDQYLNVKLT V+VVD ER+PQLGA+K CFIRGS VRYIQIP+S+VDTELLQDACRKE+A G
Sbjct:    1 MLFYSFFKTLVGKEVAVELKNDVSLTGTLHSVDQYLNVKLTGVKVVDEERFPQLGALKGCFIRGSAVRYIQIPASEVDTELLQDACRKENASG 93          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A7S3PVB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB5_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.320e-48
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +VQVVD ++YPQL A+KNCFIRGSVVRYIQIPS +VDTELLQDA RKE+A  K
Sbjct:   43 MLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENAPQK 136          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.890e-48
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +VQVVD ++YPQL A+KNCFIRGSVVRYIQIPS +VDTELLQDA RKE+A  K
Sbjct:   13 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENAPQK 105          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A7S2RW57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW57_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.080e-48
Identity = 76/93 (81.72%), Postives = 88/93 (94.62%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQG 93
            M F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KLTDVQVVD+ER+PQL A+KNCFIRGSVVRY+QIP+S+VDTELLQDA R+++ +G
Sbjct:   47 MFFNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDSERFPQLQAMKNCFIRGSVVRYVQIPASEVDTELLQDAARQQAKEG 139          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A6U3SK19_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SK19_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.650e-47
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQ 92
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KLTDVQVVDAER+PQL A+KNCFIRGSVVRY+QIP ++VDTELLQDA R+++ +
Sbjct:    6 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDAERFPQLTAMKNCFIRGSVVRYVQIPGAEVDTELLQDAARQQNKE 95          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A4D9DC94_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC94_9STRA)

HSP 1 Score: 153 bits (387), Expect = 9.800e-47
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFKTLVGKE+AVELKNDV LTG LHSVDQYLNVKL DVQVV  ERYPQL A+KN FIRGSV+R+IQ+P+SDVD +LLQD+CRK++  GK
Sbjct:    1 MLFYSFFKTLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASDVDVQLLQDSCRKDNQSGK 94          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A7S2U7M8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7M8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.180e-46
Identity = 76/91 (83.52%), Postives = 83/91 (91.21%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESA 91
            MLFYSFFKTLVGKE+A+ELKNDV LTGTLHSVDQYLNVKLTDVQVV+ E+YPQL  ++NCFIRGSVVRYIQI   DVDTELLQDA RKE+A
Sbjct:   38 MLFYSFFKTLVGKEVAIELKNDVVLTGTLHSVDQYLNVKLTDVQVVNKEQYPQLVPLRNCFIRGSVVRYIQIAPGDVDTELLQDATRKENA 128          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A7R9UBY8_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBY8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.500e-45
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESA 91
            MLF+SFFKTLVGKE+AVELKNDV L G LHSVDQYLNVKLTD+QV DAER+PQL A+KNCFIRGS +RY+QIP  +VD ELLQDA RKE++
Sbjct:   18 MLFFSFFKTLVGKEVAVELKNDVVLRGQLHSVDQYLNVKLTDLQVEDAERFPQLSAVKNCFIRGSAIRYVQIPKEEVDLELLQDAARKENS 108          
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Match: A0A024U6S4_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6S4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.610e-45
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 0
Query:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK 94
            MLFYSFFKTL+GKE+AVELKNDVAL GTLHSVDQYLN+KLTDV VV+  +YPQL  +KNCFIRGSVVRYIQI  +DVDTELLQDA R+E +  +
Sbjct:    1 MLFYSFFKTLIGKEVAVELKNDVALVGTLHSVDQYLNIKLTDVSVVEENKYPQLMNMKNCFIRGSVVRYIQIAKADVDTELLQDAARREGSANR 94          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI9.940e-6098.94U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A835YRK1_9STRA1.290e-5186.02U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A7S3PVB5_9STRA1.320e-4884.04Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3PVL2_9STRA2.890e-4883.87U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A7S2RW57_9STRA3.080e-4881.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U3SK19_9STRA4.650e-4782.22U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=D... [more]
A0A4D9DC94_9STRA9.800e-4778.72U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=N... [more]
A0A7S2U7M8_9STRA1.180e-4683.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9UBY8_9STRA2.500e-4578.02U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=P... [more]
A0A024U6S4_9STRA2.610e-4576.60U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 5.8E-16
score: 69.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..71
e-value: 7.4E-16
score: 57.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..94
e-value: 2.4E-46
score: 153.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..94
NoneNo IPR availableGENE3D2.30.30.100coord: 1..94
e-value: 3.4E-35
score: 121.6
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:693213..707350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20921.1mRNA_F-serratus_M_contig96.20921.1Fucus serratus malemRNAF-serratus_M_contig96 693060..708085 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig96.20921.1 ID=prot_F-serratus_M_contig96.20921.1|Name=mRNA_F-serratus_M_contig96.20921.1|organism=Fucus serratus male|type=polypeptide|length=95bp
MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAER
YPQLGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKESAQGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf