prot_F-serratus_M_contig96.20916.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig96.20916.1
Unique Nameprot_F-serratus_M_contig96.20916.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length512
Homology
BLAST of mRNA_F-serratus_M_contig96.20916.1 vs. uniprot
Match: A0A315W0B3_GAMAF (Uncharacterized protein (Fragment) n=1 Tax=Gambusia affinis TaxID=33528 RepID=A0A315W0B3_GAMAF)

HSP 1 Score: 58.9 bits (141), Expect = 4.890e-6
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:  439 LAAELTCPVCLCLFEDAHVLPCSHRFCLTCINGCFRSTKKQE----CPLCKVPAWKRD-LKRDVPLQNILLAYRS 508
            LA EL+CP+CL L+ D  VLPC H FCL CI+    ST   +    CP C+ P    D L+++V L NI+ ++++
Sbjct:   10 LAQELSCPICLQLYNDPVVLPCGHNFCLACISKSADSTDNGKEPLRCPECREPHDGVDTLQKNVKLSNIVESFQA 84          
BLAST of mRNA_F-serratus_M_contig96.20916.1 vs. uniprot
Match: UPI001EAF651E (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAF651E)

HSP 1 Score: 57.8 bits (138), Expect = 5.140e-6
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 0
Query:  439 LAAELTCPVCLCLFEDAHVLPCSHRFCLTCINGCFRSTKKQECPLCK 485
            L  +L+CPVC+ +F D  +L CSH FC +C+  C++ ++ QECP+C+
Sbjct:    8 LEEDLSCPVCMDIFLDPVLLSCSHNFCKSCLQQCWKGSETQECPICR 54          
BLAST of mRNA_F-serratus_M_contig96.20916.1 vs. uniprot
Match: UPI00077CE75E (zinc-binding protein A33-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077CE75E)

HSP 1 Score: 60.1 bits (144), Expect = 5.610e-6
Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 0
Query:  442 ELTCPVCLCLFEDAHVLPCSHRFCLTCINGCFRSTKKQECPLCKVPAWKRDLKRDVPLQNI 502
            +L CP+CL +F+D  +LPCSH FC  C+   +   + Q+CP+CK    ++D+ R++ L N+
Sbjct:    8 DLHCPICLEVFKDPVILPCSHSFCKACLRSWWVEKRIQQCPICKNTCEEKDVLRNLALGNL 68          
BLAST of mRNA_F-serratus_M_contig96.20916.1 vs. uniprot
Match: A0A3B4GT75_9CICH (RING-type domain-containing protein n=1 Tax=Pundamilia nyererei TaxID=303518 RepID=A0A3B4GT75_9CICH)

HSP 1 Score: 58.2 bits (139), Expect = 6.120e-6
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 0
Query:  437 MALAAELTCPVCLCLFEDAHVLPCSHRFCLTCINGCFRSTKKQECPLCKVPAWKRDLKRDVPLQNI 502
            MA  ++L CPVCL +F++  +LPCSH FC  C++  +R     +CP+C+  +   D   ++ L+N+
Sbjct:   13 MAARSDLCCPVCLDIFKEPVLLPCSHSFCKDCLDSWWRENPTHDCPVCQKQSTMHDPPCNLALKNL 78          
BLAST of mRNA_F-serratus_M_contig96.20916.1 vs. uniprot
Match: A0A3P8PT67_ASTCA (Uncharacterized protein n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8PT67_ASTCA)

HSP 1 Score: 58.5 bits (140), Expect = 6.500e-6
Identity = 24/66 (36.36%), Postives = 42/66 (63.64%), Query Frame = 0
Query:  437 MALAAELTCPVCLCLFEDAHVLPCSHRFCLTCINGCFRSTKKQECPLCKVPAWKRDLKRDVPLQNI 502
            MA  ++L CPVCL +F++  +LPCSH FC  C++  +R    ++CP+C+  +   D   ++ L+N+
Sbjct:    1 MAARSDLCCPVCLDIFKEPVLLPCSHSFCKDCLDSWWRENPARDCPVCQKQSTMHDPPCNLALKNL 66          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20916.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A315W0B3_GAMAF4.890e-642.67Uncharacterized protein (Fragment) n=1 Tax=Gambusi... [more]
UPI001EAF651E5.140e-644.68E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=On... [more]
UPI00077CE75E5.610e-639.34zinc-binding protein A33-like n=1 Tax=Nothobranchi... [more]
A0A3B4GT75_9CICH6.120e-636.36RING-type domain-containing protein n=1 Tax=Pundam... [more]
A0A3P8PT67_ASTCA6.500e-636.36Uncharacterized protein n=1 Tax=Astatotilapia call... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006642Zinc finger, Rad18-type putativeSMARTSM00734c2hc_5coord: 359..383
e-value: 0.065
score: 19.7
coord: 201..225
e-value: 0.4
score: 14.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 204..365
e-value: 3.3
score: 6.8
coord: 445..484
e-value: 1.1E-5
score: 34.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 445..485
score: 12.253
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 395..509
e-value: 3.8E-18
score: 67.2
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 445..484
e-value: 4.5E-7
score: 29.6
IPR031099BRCA1-associatedPANTHERPTHR13763BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1coord: 433..509
IPR011364Breast cancer type 1 susceptibility protein (BRCA1)PANTHERPTHR13763:SF0BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEINcoord: 433..509
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 460..469
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 435..508

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:482273..490408 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20916.1mRNA_F-serratus_M_contig96.20916.1Fucus serratus malemRNAF-serratus_M_contig96 481479..490524 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig96.20916.1 ID=prot_F-serratus_M_contig96.20916.1|Name=mRNA_F-serratus_M_contig96.20916.1|organism=Fucus serratus male|type=polypeptide|length=512bp
MPGGLAEWLHDSSVVERRDDNKKREASSNNAKASSSPRTRISRPRGQPST
ESVASSPTNAVIDVDTGTPDAPACHERGLDVQILPSKPPKVPWDPFDRGT
VDTKDDAFARLLSGRSSATKTRPNQSLVAPSTPKPHTSSSWDPFAADDGK
ENRRTSAFSKLLSPKRQACGTPTNFSGGSKRKRTIGSSSSADPKLAAATR
FCECPICGERVIIDLCSKHLDTECRGPAAIKNTPHESRSPSPPPARGEAN
ETPLTFKKLPAVVTPSDKASKKNSPRSTELTSPLAKACREATGSDTQRAA
SAIEASPSATPCAKRQHGGALAGRTTTCASRFEPPSSLRSWTMRDSATTS
TTSSEPAAVTSCPVCGKRVRADLCSLHLDTDCFGSSSACSPSKSGEVLTS
EARDGEEGEKVVRKDMSSEGDQRGGGKDGSATTEGLMALAAELTCPVCLC
LFEDAHVLPCSHRFCLTCINGCFRSTKKQECPLCKVPAWKRDLKRDVPLQ
NILLAYRSMTS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006642Znf_Rad18_put
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR031099BRCA1-associated
IPR011364BRCA1
IPR017907Znf_RING_CS