prot_F-serratus_M_contig958.20906.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig958.20906.1
Unique Nameprot_F-serratus_M_contig958.20906.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length961
Homology
BLAST of mRNA_F-serratus_M_contig958.20906.1 vs. uniprot
Match: A0A356HGE6_9BURK (ATP-dependent RNA helicase DbpA (Fragment) n=1 Tax=Cupriavidus sp. TaxID=1873897 RepID=A0A356HGE6_9BURK)

HSP 1 Score: 97.8 bits (242), Expect = 1.210e-19
Identity = 68/185 (36.76%), Postives = 94/185 (50.81%), Query Frame = 0
Query:  509 ASLAAEGVTAPTPLQASVWTAGRGSHREDLLVHGRPGDETATAYSVPILECVLERCSPEATRRHGEVQLQALVLTRTRDMAANVSELLLRLGRGMQGLAVATLVGGVPVAENSKSLAGGCHVAVGTPGRVRFLMSKGLLRPWPARTLVLDSADWLMAPIFQEDVGWIASRFAKERQILAFSGAEP 693
            A+L   G  A TP+QA+        H  DL+   R G     A+ + +L     R  P        + +QALVL  TR++A  V++ + RL R    + V TL GG P+    +SLA G HV VGTPGR+   + +G L      TLVLD AD ++   F +D+ +IAS   K+RQ L FS   P
Sbjct:    9 ATLVQLGYDAMTPIQAASLPLALAGH--DLIAQARTGSGKTAAFGLALLH----RLDPRP------LDVQALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGGSPIRPQVESLAHGAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASHAPKDRQTLLFSATYP 181          
BLAST of mRNA_F-serratus_M_contig958.20906.1 vs. uniprot
Match: A0A8B7XMK4_ACAPL (RNA helicase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XMK4_ACAPL)

HSP 1 Score: 106 bits (264), Expect = 1.420e-19
Identity = 69/213 (32.39%), Postives = 108/213 (50.70%), Query Frame = 0
Query:  507 LLASLAAEGVTAPTPLQASVWTAGRGSHREDLLVHGRPGDETATAYSVPILECVLERCSPEATRRHGEVQLQALVLTRTRDMAANVSELLLRLGRGMQGLAVATLVGGVPVAENSKSLAGGCHVAVGTPGRVRFLMSKGLLRPWPARTLVLDSADWLMAPIFQEDVGWIASRFAKERQILAFSGAEPSAIQESLGNLVGSPRLISVGESSVVV 719
            +L  L+  G   P+P+Q      GR     D++V  + G      +SV ILE +  +C+           +QALVLT TR++A  V  ++  +GR MQGL   T +GG     + + L   CH+AVGTPGRV+ L+   ++R    R L+LD AD L+   FQ+ + WI +     +Q+LA S   P A+ + L + +  P  + +    V +
Sbjct:   33 VLTGLSQAGFERPSPIQLKAIPLGRCGL--DMIVQAKSGTGKTCVFSVIILESLDLQCAG----------VQALVLTPTREIATQVQGVIQSIGRAMQGLRCHTFIGGTLFGPDRQKLKK-CHIAVGTPGRVKQLIEYDVMRTESIRLLILDEADKLLDDKFQDQINWIYNHLPVNKQMLALSATYPEALAKGLTSYMRDPTFVRLNPRKVAL 232          
BLAST of mRNA_F-serratus_M_contig958.20906.1 vs. uniprot
Match: A0A433TE52_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TE52_ELYCH)

HSP 1 Score: 103 bits (256), Expect = 1.810e-19
Identity = 73/217 (33.64%), Postives = 107/217 (49.31%), Query Frame = 0
Query:  499 EELDIPPVLLAS-----LAAEGVTAPTPLQASVWTAGRGSHREDLLVHGRPGDETATAYSVPILECVLERCSPEATRRHGEVQLQALVLTRTRDMAANVSELLLRLGRGMQGLAVATLVGGVPVAENSKSLAGGCHVAVGTPGRVRFLMSKGLLRPWPARTLVLDSADWLMAPIFQEDVGWIASRFAKERQILAFSGAEPSAIQESLGNLVGSPRLI 710
            E +D P +LL+      LA  G   P+P+Q      GR     DL+V  + G      ++V  LE V      + T     + LQ LVL  TR++A  +  ++  +G+ M GL   T +GG+P+ ++ K     CH+AVGTPGRV+ L+  G L+    R  VLD AD L+    QE + WI S     +QILA S   P  + E L   + +P  +
Sbjct:   20 EAVDFPGLLLSKPVLKGLADGGFLKPSPIQLKAIPLGRCGL--DLIVQAKSGTGKTCVFTVIALETV------DVT----SLSLQVLVLAPTREIAQQIQSVICEIGKAMPGLKCHTFIGGLPILQD-KINCKNCHIAVGTPGRVKQLIEIGALKVNSIRLFVLDEADKLLEYTLQESINWIYSSLPDNKQILALSATYPEYLAEHLTRYMRNPTFV 223          
BLAST of mRNA_F-serratus_M_contig958.20906.1 vs. uniprot
Match: A0A0F5VAB0_9GAMM (ATP-dependent RNA helicase DeaD n=10 Tax=Vibrionaceae TaxID=641 RepID=A0A0F5VAB0_9GAMM)

HSP 1 Score: 104 bits (260), Expect = 2.110e-19
Identity = 73/222 (32.88%), Postives = 117/222 (52.70%), Query Frame = 0
Query:  500 ELDIPPVLLASLAAEGVTAPTPLQA-SVWTAGRGSHREDLLVHGRPGDETATAYSVPILECV-LERCSPEATRRHGEVQLQALVLTRTRDMAANVSELLLRLGRGMQGLAVATLVGGVPVAENSKSLAGGCHVAVGTPGRVRFLMSKGLLRPWPARTLVLDSADWLMAPIFQEDVGWIASRFAKERQILAFSGAEPSAIQESLGNLVGSPRLISV-GESSVV 718
            +LD+   LL++L A G  APTP+QA S+     G+   D L   + G     A+S+P+L  + L++  P           QA+V+  TR++A  V+  +  LG+ +QGL V  + GG  + +  ++L  G H+ VGTPGRV+ L+S+  L      T +LD AD ++   F +DV WI  +  +  Q + FS   P  ++E +   + +P  I V GE+  V
Sbjct:   10 QLDLADTLLSALDAMGFVAPTPIQAASIPLLLTGT---DALGQAQTGTGKTAAFSLPLLNKINLKQHKP-----------QAIVMAPTRELAIQVAAEIKNLGKNIQGLKVLEIYGGASIVDQMRALKNGAHIVVGTPGRVKDLISRDRLHLDEVHTFILDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMVKEIVDRFLRNPARIDVAGENRTV 217          
BLAST of mRNA_F-serratus_M_contig958.20906.1 vs. uniprot
Match: A0A7S6WWQ6_LYMST (RNA helicase n=1 Tax=Lymnaea stagnalis TaxID=6523 RepID=A0A7S6WWQ6_LYMST)

HSP 1 Score: 105 bits (263), Expect = 2.510e-19
Identity = 75/222 (33.78%), Postives = 116/222 (52.25%), Query Frame = 0
Query:  499 EELDIPPVLLASLAAEGVTA-----PTPLQASVWTAGRGSHREDLLVHGRPGDETATAYSVPILECVLERCSPEATRRHGEVQLQALVLTRTRDMAANVSELLLRLGRGMQGLAVATLVGGVPVAENSKSLAGGCHVAVGTPGRVRFLMSKGLLRPWPARTLVLDSADWLMAPIFQEDVGWIASRFAKERQILAFSGAEPSAIQESLGNLVGSPRLISVGES 715
            E +D   +LL+ L  +G++A     P+P+Q      GR     DL+V  + G      ++V  LE V      E T     + +Q LVL  TR++A  + E++  +G  + GL   T +GG+P++++ K LA  CH+AVGTPGRV+ L+  G L+    R  VLD AD L+   FQE + WI S   + +QILA S   P  + + L   + +P  + +  S
Sbjct:   20 ETVDFSGLLLSKLVLQGLSAAGFQKPSPIQLKAIPLGRCGL--DLIVQAKSGTGKTCVFTVVALESV------ELTA----LCVQVLVLAPTREIAQQIHEVVKTIGGELSGLKSHTFIGGLPLSQD-KLLAKSCHIAVGTPGRVKQLIDTGALKTNSIRLFVLDEADKLLEGDFQESINWIYSTLPENKQILALSATYPEYLAQHLTAYMRNPTFVRLNIS 228          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig958.20906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356HGE6_9BURK1.210e-1936.76ATP-dependent RNA helicase DbpA (Fragment) n=1 Tax... [more]
A0A8B7XMK4_ACAPL1.420e-1932.39RNA helicase n=1 Tax=Acanthaster planci TaxID=1334... [more]
A0A433TE52_ELYCH1.810e-1933.64Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A0F5VAB0_9GAMM2.110e-1932.88ATP-dependent RNA helicase DeaD n=10 Tax=Vibrionac... [more]
A0A7S6WWQ6_LYMST2.510e-1933.78RNA helicase n=1 Tax=Lymnaea stagnalis TaxID=6523 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 515..733
e-value: 1.5E-4
score: 31.1
coord: 14..250
e-value: 0.085
score: 2.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 529..710
score: 13.307
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 26..236
score: 9.88
NoneNo IPR availableGENE3D3.40.50.300coord: 456..713
e-value: 2.4E-33
score: 117.3
NoneNo IPR availablePANTHERPTHR24031:SF627ATP-DEPENDENT RNA HELICASE DBPAcoord: 501..714
coord: 17..210
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 501..714
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 17..210
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 520..691
e-value: 3.9E-13
score: 49.6
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 19..215
e-value: 4.3E-11
score: 42.9
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 496..524
score: 8.682
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 16..221
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 493..712

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig958contigF-serratus_M_contig958:272584..299779 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig958.20906.1mRNA_F-serratus_M_contig958.20906.1Fucus serratus malemRNAF-serratus_M_contig958 272499..302587 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig958.20906.1 ID=prot_F-serratus_M_contig958.20906.1|Name=mRNA_F-serratus_M_contig958.20906.1|organism=Fucus serratus male|type=polypeptide|length=961bp
MVSLPKALQGPLRAEKEMTALQESVWSEGRGGADLLLEAPSGQETTVALS
VFLLEQLVTALESAEATKPRRYSRASAIAAKLIPGAGGRDRIGSDDDEKK
PKLHSLVLTRNREIAASLAQALVRLGKEIPNLAVATLVGGVPVAENNKTL
KGGCHIAVGTPGRVKFLIQKGTLLPESGKTLVLESADWLIAPVFMEDVGY
VVGKFPEEKQVVATSTVGASSIEEGLCALLGVPELHRIGTDGSVRKSGVR
MPSCSPPPRAPTTTTGVSDRRLPSQGHVRAAGEAWASRGPGAPMTLSLSA
KERLLEETRNALKISTARAVASSSGGGKARSPSSVASDSRLAGTPKSSDR
APPPYSSVSSGIFSNCLSSKSNERVLSGAASRRSSAGGKVGLNAGACGCD
AGLLGAMGAQDDDCASTLDLLSPGALHGSERTRAVVVSGAVVNPVTAAVA
IRMDGSNKTLGLARVPEHREQRQHHDGQRDDGQHQPFVDSPAAGTASLEE
LDIPPVLLASLAAEGVTAPTPLQASVWTAGRGSHREDLLVHGRPGDETAT
AYSVPILECVLERCSPEATRRHGEVQLQALVLTRTRDMAANVSELLLRLG
RGMQGLAVATLVGGVPVAENSKSLAGGCHVAVGTPGRVRFLMSKGLLRPW
PARTLVLDSADWLMAPIFQEDVGWIASRFAKERQILAFSGAEPSAIQESL
GNLVGSPRLISVGESSVVVVAAAPTARTPLEQEEEMAGAAVATAEAEAVV
THDAGKIAYPADQQRSLGHGLGTTSSVVTTLAAFEGASAAPGVVLTLSPA
TSTVPPMRTIGEMRAESARRAQMVGVDRGGSQPQHSHQFHNAFGMMMSAT
TNATTAATVTGTVSAAARIKEAEGSYFSGGVHGSGGSGIYGSGNVSKGRK
ASVPSTSSTASVSSADSGVRARMRLSRENQLYGEWYGGVVHGRRRPPFGD
DAPSAWTRVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase