prot_F-serratus_M_contig952.20892.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig952.20892.1
Unique Nameprot_F-serratus_M_contig952.20892.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length291
Homology
BLAST of mRNA_F-serratus_M_contig952.20892.1 vs. uniprot
Match: UPI001C4A69DE (DUF2306 domain-containing protein n=1 Tax=Pseudonocardia abyssalis TaxID=2792008 RepID=UPI001C4A69DE)

HSP 1 Score: 57.0 bits (136), Expect = 9.180e-6
Identity = 54/196 (27.55%), Postives = 90/196 (45.92%), Query Frame = 0
Query:   80 LGARGVFAKTPLVDANGLPSLLRYADHPAMRFLHIFPAGLWSLIAPLQLSERFRSKNRTTHRYLGRIFVAMSMSIGIGLIPLVQMD-KDRPHVNGAMVLLSAAYFLSTALLAINHARHKRFSEHRVWMLRHVAIGYSVHLKRVLWYTTWWVSPLMVPGYSDHTLEGYEKRTFIFGVYLFASALICVVAMEIWVRHT 274
            LG     A+ PL D   LP       +PA+  LHI    +  L A +Q+  R R  +   HR  GR+++A  +  G+ ++ +        P    A  +L   + L TA+     AR  RF+ HR WMLR VA+ +S+   R  +++T  V        S   ++  E    + GV  + S ++ ++ +E W++ T
Sbjct:   90 LGLDPARARLPLPD---LPWF-----YPAL-VLHIACGSVALLTATVQVWPRLRRTHPVVHRTSGRVYLAAVLVGGVAVLGVAPFGLSGGPTAQVANTMLGLLWVL-TAVAGHRAARQPRFAAHREWMLRSVALTFSIVANR--FWSTVCVLVFAPSVTSGGPVDAAELAQAV-GVSTWLSWVVNLLVVEWWLQRT 272          
BLAST of mRNA_F-serratus_M_contig952.20892.1 vs. uniprot
Match: UPI0007C54F5F (DUF2306 domain-containing protein n=1 Tax=Pseudonocardia autotrophica TaxID=2074 RepID=UPI0007C54F5F)

HSP 1 Score: 56.6 bits (135), Expect = 1.010e-5
Identity = 43/168 (25.60%), Postives = 79/168 (47.02%), Query Frame = 0
Query:  109 MRFLHIFPAGLWSLIAPLQLSERFRSKNRTTHRYLGRIFV-AMSMSIGIGLIPLVQMDKDRPHVNGAMVLLSAAYFLSTALLAINHARHKRFSEHRVWMLRHVAIGYSVHLKRVLWYTTWWVSPLMVPGYSDHTLEGYEKRTFIF----GVYLFASALICVVAMEIWV 271
            M   HI    +  L + LQ+    R  +   HR+ GR+++ A  +  G+ ++ +    +  P        L   + L T +L    AR +R+++HR WM+R VA+ +S+   RV      W SP+ +  Y+   L G +    +     GV ++AS ++ ++  E W+
Sbjct:   72 MLVAHIAFGSVALLTSVLQVWPWLRRTHPRVHRWSGRLYLFAGVLPGGLAVLTVAPFGELGPVQQAGNTALGVLW-LVTGVLGYRTARRRRYAQHRAWMVRSVALTWSIVANRV------W-SPICLAVYAPGALSGADGAPTVIAQAVGVSVWASWVLNLIVAEWWL 231          
BLAST of mRNA_F-serratus_M_contig952.20892.1 vs. uniprot
Match: UPI001B7D1975 (DUF2306 domain-containing protein n=1 Tax=Pseudonocardia xinjiangensis TaxID=75289 RepID=UPI001B7D1975)

HSP 1 Score: 55.8 bits (133), Expect = 1.360e-5
Identity = 46/177 (25.99%), Postives = 78/177 (44.07%), Query Frame = 0
Query:  106 HPAMRFLHIFPAGLWSLIAPLQLSERFRSKNRTTHRYLGRIFVAMSMSIG----IGLIPLVQMDKDRPHVNGAMVLLSAAYFLSTALLAINHARHKRFSEHRVWMLRHVAIGYSVHLKRVLWYTTWWVSPLMVPGYSDHTLEGYEKRTFIF----GVYLFASALICVVAMEIWVRHT 274
            +PA+   HI    +  L A LQ+    R  +   HR+ GR ++A+ +  G    + + P  Q       V   M+ L    +L TA+     AR +RF +HR WM+R VA+ +S+   R      W  S L +  ++   + G            GV ++ S ++ ++  E W+  T
Sbjct:   36 YPAL-VAHIGFGSIALLTASLQVWPWLRRTHPAVHRWSGRAYLALGVLPGGVAVLAVAPFAQTGGATGQVANTMLAL---LWLGTAVAGYRAARARRFDQHREWMVRSVALTFSIVANR-----PW--SMLCIAVFAPEVMSGGPVDPAALAQAVGVSMWLSWVVNLLVAEYWLNRT 201          
BLAST of mRNA_F-serratus_M_contig952.20892.1 vs. uniprot
Match: UPI001F13C3EB (DUF2306 domain-containing protein n=1 Tax=Pseudonocardia alaniniphila TaxID=75291 RepID=UPI001F13C3EB)

HSP 1 Score: 55.5 bits (132), Expect = 2.150e-5
Identity = 46/177 (25.99%), Postives = 80/177 (45.20%), Query Frame = 0
Query:  106 HPAMRFLHIFPAGLWSLIAPLQLSERFRSKNRTTHRYLGRIFVAMSMSIG----IGLIPLVQMDKDRPHVNGAMVLLSAAYFLSTALLAINHARHKRFSEHRVWMLRHVAIGYSVHLKRVLWYTTWWVSPLMVPGYSDHTLEGYEKRTFIF----GVYLFASALICVVAMEIWVRHT 274
            +PA+   HI    +  L A LQ+    R  +   HR+ GRI++ + +  G    + + P  Q       V   M+ L    +L+TA+     AR +RF EHR WM+R+VA+ +S+   R      W  S L +  ++   +        +     GV ++ S ++ ++  E W+  T
Sbjct:   52 YPAL-VAHIGFGSIALLTAALQVWPWLRRTHPAVHRWSGRIYLGLGVIPGGVAVLAVAPFGQTGGPTGQVANTMLAL---LWLATAVAGYRAARARRFGEHREWMVRNVALTFSIVANR-----PW--SMLCIAVFAPEVMGTGPVDPAVLAQAAGVSMWLSWVVNLLVAEYWLHRT 217          
BLAST of mRNA_F-serratus_M_contig952.20892.1 vs. uniprot
Match: A0A4S4C3F1_9BACI (DUF2306 domain-containing protein n=2 Tax=Metabacillus sediminilitoris TaxID=2567941 RepID=A0A4S4C3F1_9BACI)

HSP 1 Score: 54.7 bits (130), Expect = 2.990e-5
Identity = 48/169 (28.40%), Postives = 79/169 (46.75%), Query Frame = 0
Query:  105 DHPAMRFLHIFPAGLWSLIAPLQLSERFRSKNRTTHRYLGRIFVAMSMSIGIGLIPLVQMDKDRPHVNGAMVLLSAAYFLSTALLAINHARHKRFSEHRVWMLRHVAIGYSVHLKRVLWYTTWWVSPLMVPGY---SDHTLEGYEKRTF--IFGVYLFASALICVVAME 268
            ++PA+  +HI  A +  +   LQ   R R  N   HR +GRI+V +S+ I  GL+ L  +            L  A  +L T   A   A  +RFSEHR+WM+R  +I       R+L        P+++  Y   +  TL G  ++    +  V ++A  ++ +V +E
Sbjct:   43 EYPAL-IMHIAFAFIALVTGFLQFINRIRRDNPKVHRIIGRIYV-ISVCIS-GLLALAVIFYVEDFTKALAFLALAILWLFTTWQAYRKAVKRRFSEHRIWMIRSFSITLVAVSARIL-------VPILLLCYLTLNGFTLSGGREQLIEELLKVNIWAGLVLNIVIVE 201          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig952.20892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C4A69DE9.180e-627.55DUF2306 domain-containing protein n=1 Tax=Pseudono... [more]
UPI0007C54F5F1.010e-525.60DUF2306 domain-containing protein n=1 Tax=Pseudono... [more]
UPI001B7D19751.360e-525.99DUF2306 domain-containing protein n=1 Tax=Pseudono... [more]
UPI001F13C3EB2.150e-525.99DUF2306 domain-containing protein n=1 Tax=Pseudono... [more]
A0A4S4C3F1_9BACI2.990e-528.40DUF2306 domain-containing protein n=2 Tax=Metabaci... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018750Protein of unknown function DUF2306, membranePFAMPF10067DUF2306coord: 111..241
e-value: 9.8E-15
score: 55.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 63..110
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 192..210
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 131..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 272..290
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 231..249
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..230
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..41
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 250..271
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..162
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 174..191
NoneNo IPR availableTMHMMTMhelixcoord: 107..129
NoneNo IPR availableTMHMMTMhelixcoord: 249..271
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 212..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig952contigF-serratus_M_contig952:291326..312193 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig952.20892.1mRNA_F-serratus_M_contig952.20892.1Fucus serratus malemRNAF-serratus_M_contig952 289848..312253 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig952.20892.1 ID=prot_F-serratus_M_contig952.20892.1|Name=mRNA_F-serratus_M_contig952.20892.1|organism=Fucus serratus male|type=polypeptide|length=291bp
MSTELAPNISTATTTSRSKKAPSTRRSTSLIKDVVDDARFRSVAWCFFLV
MTGSMVGQYVIFSSWAIGTFPFITRWIETLGARGVFAKTPLVDANGLPSL
LRYADHPAMRFLHIFPAGLWSLIAPLQLSERFRSKNRTTHRYLGRIFVAM
SMSIGIGLIPLVQMDKDRPHVNGAMVLLSAAYFLSTALLAINHARHKRFS
EHRVWMLRHVAIGYSVHLKRVLWYTTWWVSPLMVPGYSDHTLEGYEKRTF
IFGVYLFASALICVVAMEIWVRHTLPAGRISSKGSDIKTG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018750DUF2306_membrane