prot_F-serratus_M_contig950.20873.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig950.20873.1
Unique Nameprot_F-serratus_M_contig950.20873.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length75
Homology
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.050e-47
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRSGHEAD 74
            MIIPVRCFTCGKVIGNKWETYLSLLQAD+NEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR+G E D
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 74          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 9.860e-42
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
            MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 138 bits (348), Expect = 2.170e-41
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRSGHEA 73
            MIIPVRCFTCGKVIGNKWE+YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR   E 
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQEV 73          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.470e-40
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
            MIIPVRCFTCGKV+GNKW++YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERR 68          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.830e-40
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRSGHEA 73
            MIIPVRCFTCGKVIGNKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+ E   G EA
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT-ESTEGMEA 145          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.200e-39
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 7.000e-39
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.370e-38
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 97          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 131 bits (329), Expect = 2.910e-38
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRSGHEAD 74
            MIIPVRCFTCGKVIGNKWETYL LLQA+++EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER    + +
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLERNPVQQRE 74          
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 130 bits (326), Expect = 3.440e-38
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVIGNKWETYL LLQAD++EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig950.20873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE9.050e-4794.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHW2_9STRA9.860e-4294.12DNA-directed RNA polymerase I, II, and III subunit... [more]
F0YLY9_AURAN2.170e-4186.30Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SAT8_9STRA2.470e-4088.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9WWK7_9STRA6.830e-4089.04Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7EXD3_9STRA5.200e-3993.75DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1V7Q3_9STRA7.000e-3995.24Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S4EET2_9STRA1.370e-3893.75Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A2P6TBS1_CHLSO2.910e-3877.03DNA-directed RNA polymerases and III subunit RPABC... [more]
B8C402_THAPS3.440e-3890.63DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 1..71
e-value: 2.3E-39
score: 135.2
NoneNo IPR availablePANTHERPTHR23431:SF5coord: 1..70
NoneNo IPR availablePRODOMPD006539coord: 9..64
e-value: 5.0E-18
score: 217.0
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PIRSFPIRSF005653RpoN_RPB10coord: 1..73
e-value: 2.4E-33
score: 111.9
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
e-value: 4.4E-33
score: 113.4
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PANTHERPTHR23431FAMILY NOT NAMEDcoord: 1..70
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19.869
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig950contigF-serratus_M_contig950:225987..238009 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig950.20873.1mRNA_F-serratus_M_contig950.20873.1Fucus serratus malemRNAF-serratus_M_contig950 225530..238112 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig950.20873.1 ID=prot_F-serratus_M_contig950.20873.1|Name=mRNA_F-serratus_M_contig950.20873.1|organism=Fucus serratus male|type=polypeptide|length=75bp
MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNSLERRSGHEAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RNAP_N/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10