prot_F-serratus_M_contig95.20830.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig95.20830.1
Unique Name	prot_F-serratus_M_contig95.20830.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	432

Homology

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 2.000e-77
Identity = 175/328 (53.35%), Postives = 205/328 (62.50%), Query Frame = 0

Query:  120 SSWASKVRAGLGSDNSPTLTGASGGG------------IGLG-------SVGDLTPGEMDTGTGVGIGEGMQGLPRSMGHLGSLAT---GGNMGPVHGLDMEGGMPGRA-MPPSSSGLDAGGIKGVVGAVGMVVGGARGHHDNLHQGQQQGSLQRGPEILGNGARRGSGVGAGMPGIDDGSAALAQEFSTLEIGASLASAV---SGRGSDGQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEGEMGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAVIKRS--GAGESGGTGPANAG 419
            SSWASKVRAG+GS++SPTL+G  GG              G+G       ++G + PG++D G    +GEG++GLP  +GHLG LA+   GG MGPVHGLDMEGGMPGRA M PS+    +G ++G+VGA                              LGNG   G  +G    G  +GS AL +                  +G G   +GFDA+KDELLGDFPCVRLRGL+ADTSVKDILDFFVGLGPVLDIVLEGG    E+GAITLFG LMDYHGALQRYSLQIKGRYIEVAPA+R+DYYSAVIKRS  GA E   T PA  G
Sbjct:   79 SSWASKVRAGIGSESSPTLSGNGGGSGGXXXXXXXXXXDGMGPSXXXXDALGAIVPGDLDPG----VGEGIRGLPHGIGHLGPLASSLGGGAMGPVHGLDMEGGMPGRALMTPSAPARGSGVVQGLVGA-----------------------------SLGNG---GQAIGLEGGGGANGSGALTEXXXXXXXXXXXXXXXXXXTGTGEAQKGFDASKDELLGDFPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGEEVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKRSAEGAAEVSPTTPAGVG 370

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.690e-33
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 0

Query:  304 GQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLE----GGGTEGE--MGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAVIKR 404
            G GF+ +K+  LG FPCVRL GL+A TSV D++ FF GLGPVLDIVL+    GGG  GE  + A+ LFGN+MDYHGALQRYSLQ+ GRY+EVAPA+R DYY+A+++R
Sbjct:   35 GDGFENSKEYTLGLFPCVRLSGLAATTSVNDVMMFFTGLGPVLDIVLDPARSGGGDGGEQTLDAVVLFGNMMDYHGALQRYSLQLLGRYVEVAPALRGDYYAAIMQR 141

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.720e-26
Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 0

Query:  314 LLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEG-------------------EMGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAVIKR 404
            +LG FPCVRL G++ DT VKD+L FF GLGPVLDIVL+    +G                    + A+ LFGNLMDYHGALQRYSLQ+ GRY+ V PA+R DYY+AV +R
Sbjct:    1 MLGVFPCVRLSGMAHDTCVKDVLAFFAGLGPVLDIVLDAEPADGGDAXXXXXXXXXXXXDVPPPLDAVVLFGNLMDYHGALQRYSLQLLGRYVAVQPALRGDYYAAVSRR 110

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A7S4NBH0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBH0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.190e-12
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0

Query:  301 GSDGQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEGEMG---AITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAV 401
            G  G+      +++LG FPCVRLRGL  + SV+D+L FF GL  VLDIV+     +   G   A  + GN MD+  ALQR    +  RYIEV    RSDYY+A+
Sbjct:  103 GGSGEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGL-VVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 205

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.630e-11
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0

Query:  304 GQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEGEMGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAVIKRSGAGESGGTGPA 416
            G G   A +E+LG FPCVRLRG+  + +V D+L FF GL  V  +++  G   G   A+ LF N MD + AL R    +  RYIE+  + R+DYY A     G+G +  TG A
Sbjct:   21 GGGRADALEEVLGPFPCVRLRGMPFEATVDDVLRFFQGLTVVDVVMILRGDGRGAGEALVLFANHMDLNMALSRDKQHMGRRYIEIFQSKRADYYHA---SQGSGSAAATGQA 130

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A7S4NCM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCM0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.770e-11
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0

Query:  301 GSDGQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEGEMG---AITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAV 401
            G  G+      +++LG FPCVRLRGL  + SV+D+L FF GL  VLDIV+     +   G   A  + GN MD+  ALQR    +  RYIEV    RSDYY+A+
Sbjct:  103 GGSGEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGL-VVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 205

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A7R9WKK8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKK8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.470e-11
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0

Query:  301 GSDGQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEGEMG---AITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAV 401
            G  G+      +++LG FPCVRLRGL  + SV+D+L FF GL  VLDIV+     +   G   A  + GN MD+  ALQR    +  RYIEV    RSDYY+A+
Sbjct:   85 GVSGEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGL-VVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 187

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: A0A7S2V6E5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.620e-11
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0

Query:  299 GRGSDGQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLE-GGGTEGEMGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAV 401
            G G  G G     +++LG FPCVR+RGL  + +++D++ FF GL  VLD+VL   G   G   A  +F N MD   ALQR    +  RYIEV  A R DYY A+
Sbjct:   82 GMGVIGGGQRDPLEDILGPFPCVRIRGLPFEATMEDVIMFFQGL-VVLDVVLAVRGDGRGSGEAFVVFSNPMDCQMALQRDRQNMGRRYIEVFQAKRGDYYQAI 184

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BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.890e-10
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 0

Query:  308 DAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVLEGGGTEGEMGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSAVI 402
            D + +++LG FPCVRLRGL  + ++ D+L FF GL P+  +++      G   AI +  NLM+   AL R    +  RYIE+  + R DYYSAV+
Sbjct:   79 DYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVV 173

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig95.20830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A6H5KD69_9PHAE	2.000e-77	53.35	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YKV5_9STRA	7.690e-33	63.55	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A836CJY6_9STRA	2.720e-26	54.55	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S4NBH0_9STRA	4.190e-12	45.19	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A836CJZ5_9STRA	2.630e-11	41.59	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A7S4NCM0_9STRA	2.770e-11	45.19	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7R9WKK8_9STRA	4.470e-11	45.19	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S2V6E5_9STRA	4.620e-11	44.23	Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa...	[more]
D8LML1_ECTSI	1.890e-10	41.05	Heterogeneous nuclear ribonucleoprotein, putative ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 316..403 e-value: 2.6E-7 score: 32.5
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 250..397
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 317..398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig95	contig	F-serratus_M_contig95:214540..223670 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig95.20830.1	mRNA_F-serratus_M_contig95.20830.1	Fucus serratus male	mRNA	F-serratus_M_contig95 214539..223670 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig95.20830.1 ID=prot_F-serratus_M_contig95.20830.1|Name=mRNA_F-serratus_M_contig95.20830.1|organism=Fucus serratus male|type=polypeptide|length=432bp
EKALWHPKGELGLFIPARAVKRAMLGAESTMTLNFTHHRGFGIRLGDMTE
EIDPNAPLHSANNTGLGNAQGANGPVGTTVGTGGGGGASLLNGASGSGNG
AATPATGGQQPLPPTTPPPSSWASKVRAGLGSDNSPTLTGASGGGIGLGS
VGDLTPGEMDTGTGVGIGEGMQGLPRSMGHLGSLATGGNMGPVHGLDMEG
GMPGRAMPPSSSGLDAGGIKGVVGAVGMVVGGARGHHDNLHQGQQQGSLQ
RGPEILGNGARRGSGVGAGMPGIDDGSAALAQEFSTLEIGASLASAVSGR
GSDGQGFDAAKDELLGDFPCVRLRGLSADTSVKDILDFFVGLGPVLDIVL
EGGGTEGEMGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPAVRSDYYSA
VIKRSGAGESGGTGPANAGTERNESLHGQDGA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf