prot_F-serratus_M_contig938.20759.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig938.20759.1
Unique Nameprot_F-serratus_M_contig938.20759.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length244
Homology
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 4.680e-79
Identity = 140/256 (54.69%), Postives = 173/256 (67.58%), Query Frame = 0
Query:    1 MDYLREAYASSD-ENGSAEVKSTIESDLGVLPADLRNMFSESV-----------YDVTAERRMSDQRHTLTQWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYEVII 244
            MD+L EAYASS  E+   E K    S LG LP++L  +F +S            YD+  ERR +++R    +WVRRFPHERGNWPTHVFIPV NS  F +MA AS+S FR++L TAW+E HG     +     T    ++    +++ + ++DPPEVVMN+MDPS +QHLSLS+T ALRAHQI P V+ LK  V  SR FTAS V GYDVLVN+DKTR+FVCLRVR GRQ VL LI KVD +MR+F Q  YYEVII
Sbjct:    1 MDHLLEAYASSSSEDEKIEEKDPNPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVII 256          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 7.820e-59
Identity = 116/246 (47.15%), Postives = 150/246 (60.98%), Query Frame = 0
Query:    1 MDYLREAYASSDENGSAEVKSTIESD-----LGVLPADLRNMFSESVYDVTAERRMSDQRHTLTQWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            MD+L EAYASS    S++ +   E+D     LG LP++L  +F +S YD+  ERR +++R     WVRRFPHERGNWPTHVFIPV NS  F +MA AS+S FR++L  AW++RHG     +     T    ++    +++ + ++DPPEVVMNNMDPS +QHLSLS+T ALRAHQI+P VQ LK  V  SRR                         VR GR+ VL LI KVD +MR+F Q  YYE
Sbjct:    1 MDHLLEAYASS----SSDDEKIEENDPKPAVLGALPSELLTLFKDSEYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSRR-------------------------VRGGRKMVLGLIAKVDPLMRRFKQSGYYE 217          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.520e-17
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 0
Query:  157 HLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            HLSLSR  ALRAHQ+EP    L+     +R F   +   Y+VLVNDD+TR+FVCL+V  G  P+L LIG+V+  +  F Q  YYE
Sbjct:  169 HLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYE 253          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.660e-17
Identity = 70/199 (35.18%), Postives = 98/199 (49.25%), Query Frame = 0
Query:   57 TLTQWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAW-KERHGPESSPQSKSLTT--VHP-PKKRVSKTSTRSLRIDPPEVVMNNMDPSSQ----QHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIV------RGYDVLVNDDKTRTFVCLRVRAGRQPVLH-LIGKVDTVMRKFNQPVYY 240
            +   W+R  PH  GNW THV+I V N+   V MA+A + + RR+L      E  G E   + K L    ++P P    S            E   +   PS Q    QHLSLSRTV LR++ +EP V  L   +  +R FT  +        G  +LVNDD++R+FV + V  G +  L  ++  VD V+ K+ QP YY
Sbjct:  133 STVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSGQHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYY 331          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: H2ZRU7_LATCH (U6 snRNA phosphodiesterase n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZRU7_LATCH)

HSP 1 Score: 85.9 bits (211), Expect = 3.200e-16
Identity = 58/180 (32.22%), Postives = 81/180 (45.00%), Query Frame = 0
Query:   62 VRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            +R FPHERGNW THV++P +  + F  +    +S  R   V                 LTTV                               + H+SLS+TVALR H IEP VQ+LK  +    RF  ++ R   V  N +KTRTF+ L V  G   +L L+ +VD  M +F+   +Y+
Sbjct:   91 MRTFPHERGNWATHVYVPYQTDEDFHELLDLLVSHLRHCAVR----------------LTTVE------------------------------EFHVSLSQTVALRYHWIEPFVQSLKERLAPFPRFYCTVER-VKVYTNQEKTRTFLGLEVSTGHDQLLELVSEVDKTMEEFDLKTFYK 223          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: A0A8B9V065_9AVES (U6 snRNA phosphodiesterase n=6 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9V065_9AVES)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-15
Identity = 53/180 (29.44%), Postives = 80/180 (44.44%), Query Frame = 0
Query:   62 VRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            VR FPHERGNW THV++P +  + F+ +    +S  R                                                ++++    + H+SLS++V LR H I P VQ+LK  +    RF   +     V  N +KTRTF+ L V AG   +L L+ +VD VM +F+ P +Y+
Sbjct:   22 VRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR----------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYK 154          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: A0A6J3DQK9_AYTFU (U6 snRNA phosphodiesterase n=14 Tax=Anseriformes TaxID=8826 RepID=A0A6J3DQK9_AYTFU)

HSP 1 Score: 82.8 bits (203), Expect = 3.010e-15
Identity = 53/180 (29.44%), Postives = 80/180 (44.44%), Query Frame = 0
Query:   62 VRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            VR FPHERGNW THV++P +  + F+ +    +S  R                                                ++++    + H+SLS++V LR H I P VQ+LK  +    RF   +     V  N +KTRTF+ L V AG   +L L+ +VD VM +F+ P +Y+
Sbjct:   70 VRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR----------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYK 202          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: A0A8B9SV39_ANAPL (U6 snRNA phosphodiesterase n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9SV39_ANAPL)

HSP 1 Score: 83.2 bits (204), Expect = 8.710e-15
Identity = 60/212 (28.30%), Postives = 91/212 (42.92%), Query Frame = 0
Query:   30 LPADLRNMFSESVYDVTAERRMSDQRHTLTQWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            +P  +  MF E       E R ++ R      VR FPHERGNW THV++P +  + F+ +    +S  R                                                ++++    + H+SLS++V LR H I P VQ+LK  +    RF   +     V  N +KTRTF+ L V AG   +L L+ +VD VM +F+ P +Y+
Sbjct:   94 VPESVLAMFREQ----EEEERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR----------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYK 254          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 79.7 bits (195), Expect = 2.940e-14
Identity = 61/182 (33.52%), Postives = 89/182 (48.90%), Query Frame = 0
Query:   60 QWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            QW R FPH  GNWP+HV I +  ++    MA+ +I D  ++LV               +++T V   + R+ ++S              +       HLSLSR   L   QIE  V +L   +   +RF+ ++  G  VLVNDDKTR+F+ LRV AG Q    ++  VD  +  F QP YY+
Sbjct:   54 QWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAI-DRAQELV--------------GENVTLVPFEELRLGESS--------------STGSGGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTL-EGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQ 205          
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Match: M4B6T3_HYAAE (U6 snRNA phosphodiesterase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6T3_HYAAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.990e-14
Identity = 62/225 (27.56%), Postives = 100/225 (44.44%), Query Frame = 0
Query:   25 SDLGVLPADLR---NMFSESVYDVTAERRMSDQRHTLTQWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRKLVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNMDPSSQQ-----HLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLVNDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYE 241
            SD G +P+D     +   ES+     +     +R +  QW R FPH  GNWP+HV I +        +A  +I                                  R  +    ++ + P + +  +  P++       HLSLSR   L   QI   V +L+  +   +RF+ ++ R   VL+NDDKTR+F+ LRV  G   +++L+ +VD  + +F QPVYY+
Sbjct:   15 SDAGPVPSDSEAECDTGEESIAHEDTQTGSKRKRSSELQWKRAFPHVDGNWPSHVRIDIVVDHELRVLAMNAIE---------------------------------RAQEIVGDTIALVPFDELQLSESPATDNEDSALHLSLSRPFVLTYDQISAFVDSLRAALKWRQRFSITLRRSL-VLLNDDKTRSFLALRVVEGGSDIVNLLQRVDQCLARFGQPVYYQ 205          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig938.20759.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL4_ECTSI4.680e-7954.69U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6W9_9PHAE7.820e-5947.15U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
A0A836CMF3_9STRA3.520e-1750.59U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
A0A4D9D6D2_9STRA7.660e-1735.18U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochlorops... [more]
H2ZRU7_LATCH3.200e-1632.22U6 snRNA phosphodiesterase n=2 Tax=Latimeria chalu... [more]
A0A8B9V065_9AVES1.320e-1529.44U6 snRNA phosphodiesterase n=6 Tax=Galloanserae Ta... [more]
A0A6J3DQK9_AYTFU3.010e-1529.44U6 snRNA phosphodiesterase n=14 Tax=Anseriformes T... [more]
A0A8B9SV39_ANAPL8.710e-1528.30U6 snRNA phosphodiesterase n=1 Tax=Anas platyrhync... [more]
G4YH94_PHYSP2.940e-1433.52U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
M4B6T3_HYAAE5.990e-1427.56U6 snRNA phosphodiesterase n=1 Tax=Hyaloperonospor... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase Usb1PFAMPF09749HVSLcoord: 30..241
e-value: 7.2E-33
score: 114.0
IPR027521U6 snRNA phosphodiesterase Usb1PANTHERPTHR13522UNCHARACTERIZEDcoord: 20..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig938contigF-serratus_M_contig938:306177..308955 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig938.20759.1mRNA_F-serratus_M_contig938.20759.1Fucus serratus malemRNAF-serratus_M_contig938 306177..308955 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig938.20759.1 ID=prot_F-serratus_M_contig938.20759.1|Name=mRNA_F-serratus_M_contig938.20759.1|organism=Fucus serratus male|type=polypeptide|length=244bp
MDYLREAYASSDENGSAEVKSTIESDLGVLPADLRNMFSESVYDVTAERR
MSDQRHTLTQWVRRFPHERGNWPTHVFIPVRNSDTFVTMARASISDFRRK
LVTAWKERHGPESSPQSKSLTTVHPPKKRVSKTSTRSLRIDPPEVVMNNM
DPSSQQHLSLSRTVALRAHQIEPMVQALKGTVGLSRRFTASIVRGYDVLV
NDDKTRTFVCLRVRAGRQPVLHLIGKVDTVMRKFNQPVYYEVII
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027521Usb1