prot_F-serratus_M_contig933.20718.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig933.20718.1
Unique Nameprot_F-serratus_M_contig933.20718.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length497
Homology
BLAST of mRNA_F-serratus_M_contig933.20718.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 465 bits (1197), Expect = 4.900e-157
Identity = 270/533 (50.66%), Postives = 339/533 (63.60%), Query Frame = 0
Query:    6 IPSVPRATLLPSLDTHRVVDEEEEPVDPTPPGSHWLFRPLPFISRADLRSETVTIHNPSAFRATSLSGYTLCDRQRLHAYAFPEGYVIPARSSIKLYCCPGRKLSERELEALPRTALLWMNQDGSLRRKEVLNDTGDTVVLYDNHGKEIAALDLPGLDDEPFGGGDGSAVAGSLMRLPGVKLKQVLALRTLTLTLCYLRVVAILVSASFVMVHPDVFCLLTLVAHVLDVLCRWASSQPGATMDEFGVVLATLGDRLSALVLVGSLVVLDGKARNARMFGGILALDIGEWWFILSVASAAGGFRPLAGVHFIKETGTAPDFTTHLMVHYPIVLTAVSLGNEAFLLWSYLLASSRLSHGLQPMMA------SGVCKVARWSF---------------------------------IVDEGLFCEGGDWSDGFVEVTKG---NIRVELLEELGSIGGFHVVWKAVWWTLKLCCVSRQVLSCIQALIAMSTLSSGVIADAAGQDLQRRRSTGERVHRGRSVGRDNGGRRARSRSRVR 496
            +PSVPR+ LLP LDTH+V +E++ P DPTPPGSHWLFRP PFI+ ADL +ETVTI NPS +R  +L+GYTL DR + H Y FPE +V+ AR+S+ LYCCPG K SE  L  LP+  LLW NQDGSLRRKEV+ ++G+T+VL D  G E+A L++PG D E            +   LPGVK  QVLALRTL L+LCYLR+V   ++A+ V VHPDVF L+T +AHV D+L RWASS+PG  MD+FGVVLAT+GDR S LVL+GSLV+LD   R++++FGG+LALD+   W  LSVAS + G  PLAG   +   G APDF TH+M+ +P+ LT VSLG+EAFL+WSYL+ASS L  GL+ M+A      S +      SF                                   D G+F  GG   +       G   ++ V   E+ G    F   WKAVW TL +CC +RQ+LSCIQALI+MS+LSSGVIADAAG+D+QRR     R   G    R       RSRSR R
Sbjct:    8 VPSVPRSLLLPGLDTHQVQEEDDVPTDPTPPGSHWLFRPPPFIAHADLEAETVTIRNPSVWRGANLAGYTLTDRLQRHTYHFPERFVLRARTSLTLYCCPG-KFSEGALHNLPQPFLLWHNQDGSLRRKEVMENSGETLVLSDAKGNEVAVLEVPGTDGEE-----------TSRTLPGVKRSQVLALRTLVLSLCYLRLVCTGLAAARVTVHPDVFLLVTALAHVFDILSRWASSRPGVPMDDFGVVLATMGDRFSYLVLLGSLVLLDKDPRHSQIFGGMLALDMTANWLQLSVASISNGSHPLAGT-LVSGRGAAPDFATHIMLTHPVELTLVSLGSEAFLVWSYLVASSDLPLGLRAMVAKAGDFLSSLFTELLSSFSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGGVF--GGFEPNRIDSAALGLGEDLGVREAEDDGDGSPFSTAWKAVWMTLMVCCAARQLLSCIQALISMSSLSSGVIADAAGKDMQRRHPRSRRSSGGXXXSR------GRSRSRAR 519          
BLAST of mRNA_F-serratus_M_contig933.20718.1 vs. uniprot
Match: A0A7S2XUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUW2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.400e-27
Identity = 118/428 (27.57%), Postives = 181/428 (42.29%), Query Frame = 0
Query:   11 RATLLPSLDT-HRVVDEEEEPVDPTPPGSHWLFRPL-------PFISRADLRSETVTIHNPSAFRATSLSGYTLCDRQRLHAYAFPEGYVIPARSSIKLYCCP------------------GR-KLSERELEALPRTALLWMNQDGSLRRKEVLNDTGDTVVLYDNHGKEIAALDLPGLDDEPFGGGDGSAVAGSLMRLPGVKLKQVLALRTLTLTLCYLRVVAILVSASFVMVH----------------------PDVFCLLTLVAHVLDVLCRW-----ASSQPGATMDEFGVVLATLGDRLSALVLVGSLVVLDGKARNARMFGGILALDIGEWWFILSVASAAGGFRPLAGVHFIKETGTAPDFTTHLMVHYPIVLTAVSLGNEAFLLWSYLLASSRLSHGLQPMM---ASGVCKVARWSFIV 381
            RA  +P+LD  +   D +++     P G +W+ R L       PF+   DL  ET+ + N S+ R   L GY+L D    +++ FP+ Y++P  S +K++C P                  GR  +S+  L A  R  LLW+N+DGS R + VLND+GDT VL    G E+++L       E  G  +         R P +   Q   +R  ++ L Y R++ ++ SA F +                        P VF  L L+A  LD+  RW     +        D     + T+ DRLS +++ GSLVVL G      + GG++ LDI   W     A          G   +    TA          +P+ +T  +LG E  L   ++   +  SH + P+      G   V  WS +V
Sbjct:   12 RAIQVPALDLDYTGWDRDDDGATFNPFGFYWVERILSAVVDQPPFVKDVDLFGETIIVQNDSS-RPFKLGGYSLSDEGMRNSFHFPDDYILPPNSEVKVFCHPTGHPPLSSEMRSAPSQGHGRMNVSDGPLSAGCRDVLLWLNRDGSRRGRPVLNDSGDTAVLLSPLGLEVSSL-----TKERSGASEA--------RQPALLASQRQCIRAASMALLYSRLLVVVWSALFSLPPATGIPGGGGARPKERGVEEGWWPLVFLGLHLLAFALDICGRWLRLVASGGHLHMHPDTLEQTMMTMTDRLSVVIMCGSLVVLYGGTIGT-ILGGVILLDICSHWMQAQAAWMGAAGAVAGGGDAMLAFSTA----------HPLAVTVANLGQEVLLAVLFVGHPAVASHLVAPLSLGEGQGPGAVGLWSPVV 414          
BLAST of mRNA_F-serratus_M_contig933.20718.1 vs. uniprot
Match: A0A482UTY9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UTY9_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 4.130e-9
Identity = 35/94 (37.23%), Postives = 50/94 (53.19%), Query Frame = 0
Query:   46 PFISRADLRSETVTIHNPSAFRATSLSGYTLCDRQRLHAYAFPEGYVIPARSSIKLYCCPGRKLSERELEALPRTALLWMNQDGSLRRKEVLND 139
            PFIS  D   E ++I+NP      SL  + + D + LH + F    ++P  S + LY CPG   + + +        LW N DG+LRRKEVLN+
Sbjct:   19 PFISSLDPEEEYMSIYNPGPSNL-SLDQFFVVDWRHLHKFVFGPDDIVPGNSQLHLYTCPGSHHTGQYIAPYA----LWTNHDGTLRRKEVLNN 107          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig933.20718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHR1_ECTSI4.900e-15750.66LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XUW2_9STRA2.400e-2727.57Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482UTY9_9ARCH4.130e-937.23Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 274..293
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 221..240
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..190
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 215..220
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 252..273
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 294..311
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 241..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..214
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 312..330
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 356..496
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 331..355
NoneNo IPR availableTMHMMTMhelixcoord: 251..273
NoneNo IPR availableTMHMMTMhelixcoord: 190..212
NoneNo IPR availableTMHMMTMhelixcoord: 294..316
NoneNo IPR availableTMHMMTMhelixcoord: 331..353
IPR001322Lamin tail domainPROSITEPS51841LTDcoord: 43..161
score: 9.883
IPR036415Lamin tail domain superfamilySUPERFAMILY74853Lamin A/C globular tail domaincoord: 48..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig933contigF-serratus_M_contig933:106513..156826 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig933.20718.1mRNA_F-serratus_M_contig933.20718.1Fucus serratus malemRNAF-serratus_M_contig933 105889..157203 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig933.20718.1 ID=prot_F-serratus_M_contig933.20718.1|Name=mRNA_F-serratus_M_contig933.20718.1|organism=Fucus serratus male|type=polypeptide|length=497bp
MSVILIPSVPRATLLPSLDTHRVVDEEEEPVDPTPPGSHWLFRPLPFISR
ADLRSETVTIHNPSAFRATSLSGYTLCDRQRLHAYAFPEGYVIPARSSIK
LYCCPGRKLSERELEALPRTALLWMNQDGSLRRKEVLNDTGDTVVLYDNH
GKEIAALDLPGLDDEPFGGGDGSAVAGSLMRLPGVKLKQVLALRTLTLTL
CYLRVVAILVSASFVMVHPDVFCLLTLVAHVLDVLCRWASSQPGATMDEF
GVVLATLGDRLSALVLVGSLVVLDGKARNARMFGGILALDIGEWWFILSV
ASAAGGFRPLAGVHFIKETGTAPDFTTHLMVHYPIVLTAVSLGNEAFLLW
SYLLASSRLSHGLQPMMASGVCKVARWSFIVDEGLFCEGGDWSDGFVEVT
KGNIRVELLEELGSIGGFHVVWKAVWWTLKLCCVSRQVLSCIQALIAMST
LSSGVIADAAGQDLQRRRSTGERVHRGRSVGRDNGGRRARSRSRVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001322Lamin_tail_dom
IPR036415Lamin_tail_dom_sf