prot_F-serratus_M_contig93.20689.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig93.20689.1
Unique Nameprot_F-serratus_M_contig93.20689.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length125
Homology
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BLAST of mRNA_F-serratus_M_contig93.20689.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.890e-15
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0 
Query:    1 MCAKLGGACVCKLAVHLSRLGGLRELDIAENDLGMLPESVFHLP 44
            MCAK+G ACVC+LAVHLSRLG L+ELD+AENDLG+LPE VF LP
Sbjct:   34 MCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELP 77
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BLAST of mRNA_F-serratus_M_contig93.20689.1 vs. uniprot
Match: A0A836CFY3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.730e-7
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:    1 MCAKLGGACVCKLAVHLSRLGGLRELDIAENDLGMLPESVF----HLPELE 47
            MC KLGGAC+C+LAV L R  GL+ LD+A+N L  LPE+V     HL  L+
Sbjct:   43 MCEKLGGACLCRLAVCLGRCSGLQSLDLAKNGLATLPEAVLEQQHHLRHLD 93
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig93.20689.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ4_ECTSI3.890e-1579.55Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836CFY3_9STRA5.730e-754.90Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 46..59
score: 47.79
coord: 66..79
score: 51.55
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 8..103
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..112
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 66..89
e-value: 0.015
score: 24.4
coord: 43..65
e-value: 0.8
score: 18.7
coord: 20..42
e-value: 56.0
score: 7.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 44..100
e-value: 3.8E-11
score: 42.6
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 68..90
score: 7.82
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 22..43
score: 5.895
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 45..66
score: 6.472
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 91..112
score: 5.202
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 4..113
e-value: 1.9E-25
score: 91.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig93contigF-serratus_M_contig93:555543..557817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig93.20689.1mRNA_F-serratus_M_contig93.20689.1Fucus serratus malemRNAF-serratus_M_contig93 555400..557884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig93.20689.1 ID=prot_F-serratus_M_contig93.20689.1|Name=mRNA_F-serratus_M_contig93.20689.1|organism=Fucus serratus male|type=polypeptide|length=125bp
MCAKLGGACVCKLAVHLSRLGGLRELDIAENDLGMLPESVFHLPELEHLD
ISGNGLTALPPTVAALANLRTLRLSNNVLKELPRELGSLPSLQEVHVDGN
IRLDLQNLDELLQRRPELRIVGSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf