prot_F-serratus_M_contig902.20444.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig902.20444.1
Unique Nameprot_F-serratus_M_contig902.20444.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length192
Homology
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A6H5L770_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L770_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 3.500e-72
Identity = 119/216 (55.09%), Postives = 148/216 (68.52%), Query Frame = 0
Query:    1 MDASDASPDGSNRGEVGIAAARYVYGPANVNLLPCKVHHTGSAPVSTYFRPQPPKDSKNM---------TPVADKVKENGIAGDG-----KSSNGDKSQPATVA---------REGKGEETWVQLEDDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCPEGLQD--EDVTAFWAAETSFRDITVWGHDEIRRQSTVDRCLTWLEVSNSIHDP 191
            MD   AS D  +R EVGI AAR+VYGPA+V+LLPCK+HHTG APV+TYFRP P K+++N          T +AD+   NG+ GDG      ++ G       VA             G++ W   EDD+ EHTARFRGRK +GRKVELP G+HGVVLRE+PCP G+++  EDV ++WAAETSFR++TVWGHD+ RR+STVDR L WLEVS SIHDP
Sbjct:    1 MDTYSASSDTHSRCEVGIGAARHVYGPASVHLLPCKIHHTGPAPVATYFRPSPAKENRNSDTTAAAPTATALADETGNNGV-GDGAARKTSTAPGSGENAKLVAXXXXXXXXGESAVGDQKWELFEDDSAEHTARFRGRKFVGRKVELPKGVHGVVLREKPCPPGVRENNEDVASYWAAETSFREVTVWGHDQPRRESTVDRSLAWLEVSKSIHDP 215          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: D8LTC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC6_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.810e-44
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 0
Query:   95 GEETWVQLEDDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCPEGLQD--EDVTAFWAAETSFRDITVWGHDEIRRQSTVDRCLTWLEVSNSIHDP 191
            G++ W   EDD+ EHTARFRGRK +GRKVELP G+HGVVLRE+PCP G+++  EDV ++WAAETSFR++TVWGHD+ R++STVDR L WLEVS SIHDP
Sbjct:  105 GDQKWELFEDDSAEHTARFRGRKFVGRKVELPKGVHGVVLREKPCPPGVRENNEDVASYWAAETSFREVTVWGHDQPRQESTVDRSLAWLEVSKSIHDP 203          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A6J0JIT6_RAPSA (ribonuclease H2 subunit C isoform X1 n=3 Tax=Brassiceae TaxID=981071 RepID=A0A6J0JIT6_RAPSA)

HSP 1 Score: 59.3 bits (142), Expect = 9.390e-8
Identity = 30/95 (31.58%), Postives = 43/95 (45.26%), Query Frame = 0
Query:  104 DDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCP------EGLQDEDVTAFWAAETSFRDITVWGHDEI-RRQSTVDRCLTWLEVSNSIHDP 191
            D  +   A FRGRKL G  + LPTG  G VL +          +   D +    W A+  F  +T W HD +  +  T+ R   W  +S ++H P
Sbjct:   52 DGVRAEEAHFRGRKLQGATISLPTGYSGFVLGQASNKNANGKRKASSDTEENPCWEAKAKFDKVTYWNHDSLPSKDDTILRSFHWFSISEALHKP 146          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A0D3BQL3_BRAOL (Uncharacterized protein n=5 Tax=Brassica TaxID=3705 RepID=A0A0D3BQL3_BRAOL)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 27/95 (28.42%), Postives = 43/95 (45.26%), Query Frame = 0
Query:  104 DDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCP------EGLQDEDVTAFWAAETSFRDITVWGHDEI-RRQSTVDRCLTWLEVSNSIHDP 191
            D  +   A FRGRKL G  + +P+G  G VL +          +   DE+    W  +  F  +T W HD +  +  T+ R   W  ++ ++H P
Sbjct:   52 DGVRTEEAHFRGRKLQGATISMPSGYSGFVLGQASNKNANGKRKACSDEEENPCWEVKAKFDKMTYWNHDTLPSKDDTILRSFHWFSIAEALHKP 146          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A078IW19_BRANA (BnaA05g34570D protein n=5 Tax=Brassica TaxID=3705 RepID=A0A078IW19_BRANA)

HSP 1 Score: 55.8 bits (133), Expect = 1.730e-6
Identity = 32/113 (28.32%), Postives = 53/113 (46.90%), Query Frame = 0
Query:   86 PATVAREGKGEETWVQLEDDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCP------EGLQDEDVTAFWAAETSFRDITVWGHDEI-RRQSTVDRCLTWLEVSNSIHDP 191
            PA V+   K + + V++ D  +   A FRGRKL G  + +P+G  G VL +          +   DE+    W  +  F  +T W HD +  +  T+ R   W  ++ ++H P
Sbjct:   35 PAQVSNYFKPKSSEVEV-DGVRTEEAHFRGRKLQGATILMPSGYSGFVLGQASNKNANGKRKACSDEEENPCWEVKAKFDKMTYWNHDTLPSKDDTILRSFHWFNIAEALHKP 146          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A384LFC3_ARATH (Uncharacterized protein n=4 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A384LFC3_ARATH)

HSP 1 Score: 55.1 bits (131), Expect = 3.370e-6
Identity = 29/96 (30.21%), Postives = 43/96 (44.79%), Query Frame = 0
Query:  104 DDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPC-------PEGLQDEDVTAFWAAETSFRDITVWGHDEI-RRQSTVDRCLTWLEVSNSIHDP 191
            D  +   A FRGRKL G  + LP+G  G VLR+             +  ED    W  +  F ++T W HD +  +  T  R   W  ++ ++H P
Sbjct:   51 DGVKTEEAHFRGRKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTED-NQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEALHKP 145          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: UPI0010A37C9B (ribonuclease H2 subunit C-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A37C9B)

HSP 1 Score: 53.9 bits (128), Expect = 9.520e-6
Identity = 34/111 (30.63%), Postives = 57/111 (51.35%), Query Frame = 0
Query:   86 PATVAREGKGEETWVQLEDDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCPE----GLQDEDVTAFWAAETSFRDITVWGHDEIRRQST-VDRCLTWLEVSNSIHDP 191
            PA+V+   K + T +++E    +  A FRGRKL G  + LP+G  G VL ++   E         + +  W  + +F++IT W HD +  Q+    R   WL ++ ++H P
Sbjct:   44 PASVSHYFKPKSTGIEVEGLPLQE-AYFRGRKLDGTTILLPSGYRGFVLGKKSQDEKNSSAASYSENSNSWEMKATFQNITYWNHDCLPSQNDDFMRAFHWLTIAKALHTP 153          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A1J3D346_NOCCA (Ribonuclease H2 subunit C n=3 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A1J3D346_NOCCA)

HSP 1 Score: 53.5 bits (127), Expect = 1.240e-5
Identity = 28/95 (29.47%), Postives = 42/95 (44.21%), Query Frame = 0
Query:  104 DDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCP------EGLQDEDVTAFWAAETSFRDITVWGHDEI-RRQSTVDRCLTWLEVSNSIHDP 191
            D  +   A FRGRKL G  + LP+G  G VL +          +    E+    W A+  F  +T W HD +  +  T  R   W  ++ ++H P
Sbjct:   51 DGVRTEEAHFRGRKLQGATISLPSGYSGFVLGQASNRNANGKRKASSPEEEKPCWEAKAKFDKVTYWNHDTLPSKDDTFLRSFHWFSIAEALHKP 145          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A1J3HLL5_NOCCA (Ribonuclease H2 subunit C (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3HLL5_NOCCA)

HSP 1 Score: 53.5 bits (127), Expect = 2.150e-5
Identity = 28/95 (29.47%), Postives = 42/95 (44.21%), Query Frame = 0
Query:  104 DDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCP------EGLQDEDVTAFWAAETSFRDITVWGHDEI-RRQSTVDRCLTWLEVSNSIHDP 191
            D  +   A FRGRKL G  + LP+G  G VL +          +    E+    W A+  F  +T W HD +  +  T  R   W  ++ ++H P
Sbjct:   93 DGVRTEEAHFRGRKLQGATISLPSGYSGFVLGQASNRNANGKRKASNPEEEKPCWEAKAKFDKVTYWNHDTLPSKDDTFLRSFHWFSIAEALHKP 187          
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Match: A0A5N5CVD5_9PEZI (Uncharacterized protein n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5CVD5_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 2.150e-5
Identity = 34/111 (30.63%), Postives = 51/111 (45.95%), Query Frame = 0
Query:   96 EETWVQLEDDTQEHTARFRGRKLIGRKVELPTGIHGVVL-------------REQPCPEGLQDEDVTAFWAAETS-FRDITVWGHDEI--RRQSTVDRCLT-WLEVSNSIH 189
            E  W   E+D  + TA FRGRKL GRK++LP G  G VL             R     E  +DE +      E   F ++ VWGH+ +    +    + ++ W+  + +IH
Sbjct:   33 ERYWRPEEEDDGKQTAHFRGRKLRGRKLQLPDGYRGSVLSSTNKVLPQSEGDRGTEAEEDEEDERIEVRLMEEVGEFDEVVVWGHEVVPDETEDAYSKGISEWISFAEAIH 143          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20444.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5L770_9PHAE3.500e-7255.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTC6_ECTSI1.810e-4468.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6J0JIT6_RAPSA9.390e-831.58ribonuclease H2 subunit C isoform X1 n=3 Tax=Brass... [more]
A0A0D3BQL3_BRAOL1.700e-628.42Uncharacterized protein n=5 Tax=Brassica TaxID=370... [more]
A0A078IW19_BRANA1.730e-628.32BnaA05g34570D protein n=5 Tax=Brassica TaxID=3705 ... [more]
A0A384LFC3_ARATH3.370e-630.21Uncharacterized protein n=4 Tax=Arabidopsis thalia... [more]
UPI0010A37C9B9.520e-630.63ribonuclease H2 subunit C-like n=1 Tax=Prosopis al... [more]
A0A1J3D346_NOCCA1.240e-529.47Ribonuclease H2 subunit C n=3 Tax=Coluteocarpeae T... [more]
A0A1J3HLL5_NOCCA2.150e-529.47Ribonuclease H2 subunit C (Fragment) n=2 Tax=Nocca... [more]
A0A5N5CVD5_9PEZI2.150e-530.63Uncharacterized protein n=1 Tax=Lasiodiplodia theo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013924Ribonuclease H2, subunit CPFAMPF08615RNase_H2_suCcoord: 29..187
e-value: 3.9E-17
score: 62.7
NoneNo IPR availableGENE3D3.30.200.130coord: 83..191
e-value: 1.9E-17
score: 65.0
coord: 8..65
e-value: 5.7E-7
score: 31.0
NoneNo IPR availablePANTHERPTHR47204FAMILY NOT NAMEDcoord: 28..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig902contigF-serratus_M_contig902:260328..267086 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig902.20444.1mRNA_F-serratus_M_contig902.20444.1Fucus serratus malemRNAF-serratus_M_contig902 260185..267164 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig902.20444.1 ID=prot_F-serratus_M_contig902.20444.1|Name=mRNA_F-serratus_M_contig902.20444.1|organism=Fucus serratus male|type=polypeptide|length=192bp
MDASDASPDGSNRGEVGIAAARYVYGPANVNLLPCKVHHTGSAPVSTYFR
PQPPKDSKNMTPVADKVKENGIAGDGKSSNGDKSQPATVAREGKGEETWV
QLEDDTQEHTARFRGRKLIGRKVELPTGIHGVVLREQPCPEGLQDEDVTA
FWAAETSFRDITVWGHDEIRRQSTVDRCLTWLEVSNSIHDP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013924RNase_H2_suC