prot_F-serratus_M_contig902.20428.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig902.20428.1
Unique Nameprot_F-serratus_M_contig902.20428.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length502
Homology
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI)

HSP 1 Score: 724 bits (1868), Expect = 1.590e-258
Identity = 375/515 (72.82%), Postives = 412/515 (80.00%), Query Frame = 0
Query:    1 MNSNVFDYLERLPPDALDTLYGK------DAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVEAFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQGDVPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVS--SGDSRPQQQPQQPGGVAAVRKGTREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWNSPFLSSGGGISVGDTW----------TSGKKLIVVAPGIAGVLTEFI 497
            M+ NVFDYLERLPPDALD LYG         G  SHGQWTCRA+LQSLPQLAKQHVMRL+FVE  V K +LKSWVKK+YQRVHAAS+RKL+SLR+LL SA GQEYQLNPPFRENL+RALC ++K PWQGDVPL+ADRSPPTV+KIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFMEESGLM+  RG GALRITDKGYEFMLKE HVQAW+VVHALINGYGRTQPGCRDELLAFLFQLSYCK+GDAYPLGALT TQRDLAQDFV+LGLLFKRKAKSTRFYPTSIA+NLIFGSS S  +G +      ++P          REDD ++ IIVETNFQV+AYTRSKLHFAMLSLFL+LR  LPN I+GAITRESMR+AL+TGIKGRQVLDFLK HAHPVVRRR+PVVPENIADQ        VLLWERERDRM   DGVL+DVS+AS D FR + EFAN  +GLLW+SP                           KKL+VV+PGI   L   I
Sbjct:   19 MSLNVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSAGGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAXXXXTQRKPQPAXXXXXXKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQ--------VLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAI 525          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE)

HSP 1 Score: 506 bits (1303), Expect = 1.150e-174
Identity = 260/367 (70.84%), Postives = 283/367 (77.11%), Query Frame = 0
Query:    1 MNSNVFDYLERLPPDALDTLYG------KDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVEAFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQGDVPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGGALRITDKG------------------------------------------------YEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVS-----SGDSRPQQQPQQPGGV 308
            M+ NVFDYLERLPPDALD LYG      +  G  SHGQWTCRA+LQSLPQLAKQHVMRL+FVE  V K +LKSWVKK+YQRVHAAS+RKL+SLR+LL SADGQEYQLNPPFRENL+RALC ++K PWQGDVPL+ADRSPPTV+KIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFMEESGLM+  RGGGALRITDKG                                                YEFMLKE HVQAW+VVHALINGYGRTQPGCRDELLAFLFQLSYCK+GDAYPLGALT TQRDLAQDFV+LGLLFKRKAKSTRFYPTSIA+NLIFGSS S     +G    Q++PQ  GG+
Sbjct:   19 MSLNVFDYLERLPPDALDKLYGAAPPAAQGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSADGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGGGALRITDKGQEEAWNCSRGARGGSFLCLRGGVGRGGARVLSTSSMLEGAVYPRRTGLYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGAQRKPQPAGGL 385          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: W4FDT1_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDT1_9STRA)

HSP 1 Score: 323 bits (829), Expect = 3.210e-102
Identity = 192/470 (40.85%), Postives = 274/470 (58.30%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFV-EAFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQGDVPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFG-------SSVSSGDS-----RPQQQPQQPGGVAAVRKGTREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLW 459
            N F++L  LP  ++D LY +DA       W C+A+ QS+  LA+Q VMRL+F  +       +  WV+   Q    A+I KL  LR+L  +    EY LNP F++ L++AL +   +PW+          P   +++E+    +W  VL+F+VGS     +APP  V+  +E +GLM+ ++    AL ITD GYEFMLK+ H Q WI V   +    R      +E+L FLFQ+SYC++ + Y +  LT  Q+ L  D V+LGLL++R AK+TRFY TS+A+NLIFG       SS++         RP + P  P   AA        DA + I+VETNF+V AYT+S LH AMLS+F+D+  RLPN+ +G +TRES+R AL+ GI   Q+ DFL  HAHP +   SPV+PENIADQ        + LW+RER+R+  + G L+D    +ED F  V++FA +   +LW
Sbjct:    2 NAFEFLGSLPGGSVDRLY-QDA-------WACQAVFQSMSPLAQQIVMRLLFTNQGSYSHDAILQWVQDPAQVKMTAAIEKLRHLRVLRMAHGTAEYVLNPVFQDQLKKALSSLGGSPWEAGRHKLPSEKPIAAAELEQYARKRWDAVLHFMVGST--AVAAPPPTVIGILEHTGLMQPSKTDARALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILSAEEMLQFLFQMSYCRMNEYYAVADLTRHQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRSSITMSQGLDHLHRPSKSPHLPPPTAAAA------DAHLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQ--------LYLWQRERNRIKFDAGELVDGFVTTED-FDVVLKFAQDVGVMLW 446          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: F0W5B1_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Albugo TaxID=65356 RepID=F0W5B1_9STRA)

HSP 1 Score: 322 bits (825), Expect = 1.350e-101
Identity = 195/477 (40.88%), Postives = 272/477 (57.02%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVEAFVDKSLLKSWV----------------KKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQ-GDVPLTADRSPPTVS-KIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRPQQQPQQPGGVAAVRKGTREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWNSP 462
            + F++LE LP   L++LY           W C+A+ QSLP LA+Q VMRL+     V + +L+ W+                 K    ++  SI+KL  LR+  QS+    YQL+  F++ L+ ALC     PW+ G   L  D      S ++ER   S W  VL+++VGS       PP  VV  +  + LM+ +    AL ITDKGYEFMLK+ H+Q WI +   I    RT    ++++L FLFQ+SYC++   YP+  LT TQ+ L  DF + GLL+++++ S RFY TS+AINLIFG + +S  S  Q        VA  R  +  D  T   IVETNF+V AYT S LH AMLS+F+D+  RLPN+ IG ITRES+R AL  GI  +Q+ DFL  HAHP +++ +P+VPENIADQ        + LWE+ER+R+   +G+L D  ++ E+ F QV E+A   R L W  P
Sbjct:    2 DAFEFLETLPNATLESLYADP--------WVCQAVFQSLPSLAQQFVMRLLSCNTVVQEQVLREWLVTQVQSDPGTSVGKEKAKSIDEIYQHSIQKLRKLRVFTQSSTDS-YQLHAGFQKQLKYALCHLGGCPWEVGRRKLGKDIEVSFASTELERYARSHWDAVLHYMVGSTSV--PDPPQAVVDILLRTNLMQASVDQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQVNAYYPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDRFYTTSLAINLIFGGTTTSNYSETQ--------VARPRMSSMSDLLT---IVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQ--------IYLWEKERNRIKFLEGILFDGFNSKEE-FEQVREYAQKQRFLTWTDP 447          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: A0A836C856_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C856_9STRA)

HSP 1 Score: 321 bits (823), Expect = 4.600e-101
Identity = 196/456 (42.98%), Postives = 262/456 (57.46%), Query Frame = 0
Query:   60 VDKSLLKSWVKKDYQRVHAASIRKLISLRILLQS-------ADGQEYQ-----LNPPFRENLRRALCTANKAPWQGD--VPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYC------------------------------------------KLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRPQQQPQQPGGVAAVRKGTREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLW 459
            + K LLK WV+  Y  VH A++R+L +LR+L+++       A  Q+ +     LNPPFR+NL +AL T + APW+ D    L  D+  P+ +KIE +M  +W+ VL+FLV SD  G    P+ V  FM+++GLM        L IT++GYEFML++ HVQAW+ V +LI     +    RD+LL+FLF LSYC                                          K+ + YPL ALT  Q  LA+DF+DLGLL++RK  S RFY T IA+NL+FG++ +   SR   Q       AA      +    + IIVETNFQVVAYT S LH AML+LFL+LR RLPN++IG ITRES+R+AL TGIK  Q+L+FLK HAHP V  R P++PENIADQ        ++LWERER R+  + G LLD+       F +V E+A      LW
Sbjct:   25 ISKDLLKGWVRDAYTGVHRAAVRQLSALRVLVRAQELSGAAAAAQQQRRGMIALNPPFRKNLLQALLTPDVAPWKDDPRFALRPDKLTPSRAKIEGEMRRKWEAVLHFLVASDGAGAGPTPS-VRAFMQQAGLMARRGRSEQLVITNRGYEFMLRDIHVQAWMFVLSLIRSKS-SDAQARDDLLSFLFMLSYCTVSAALQPLEGHHNAQSVCAAPSLSCKPLPAAPSASVNRCSEKVCEDYPLLALTPAQAQLARDFIDLGLLYQRKPSSQRFYTTEIAVNLVFGAAAAEHPSRAVIQ-------AADASAQLDLAPRMTIIVETNFQVVAYTTSDLHVAMLTLFLELRARLPNMVIGVITRESVRQALVTGIKASQILNFLKWHAHPNVINRRPMIPENIADQ--------IILWERERTRVKYDAGTLLDLPFEGVHDFDKVAEYAEELGACLW 463          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: A0A024TBA0_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA0_9STRA)

HSP 1 Score: 320 bits (819), Expect = 1.040e-100
Identity = 197/469 (42.00%), Postives = 274/469 (58.42%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVE-AFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQ-GDVPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGS---------SVSSGDSRPQQQPQQPGGVAAVRKGTREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWN 460
            N F++L  LP  ++D LY +DA       W C+A+ QSL  LA+Q VMRL+F   A      +  WV+   Q    A+I KL  LR+L       +Y LNP F+E L++AL +   +PW+ G   L A++  P V ++E     +W  VL+F+VGS     +APPA V+  +E + LM+ ++    AL ITD GYEFMLK+ H Q WI V   +    R      DE+L FLFQ+SYC++ + Y +  LT  Q+ L  D V+LGLL++R AK+TRFY TS+A+NLIFG          ++S G          P             D+++ I+VETNF+V AYT+S LH AMLS+F+D+  RLPN+ +G +TRES+R AL+ GI   Q+ DFL  HAHP +   SPV+PENIADQ        + LW+RER+R+  E G L+DV  A+ED F  VV+ A +   LLW+
Sbjct:    2 NAFEFLGSLPGGSVDRLY-QDA-------WACQAVFQSLSPLAQQIVMRLLFSNHATYAHDAILHWVQDAAQDKMTAAIEKLRHLRVLRVVQGSLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKPIPAV-ELELYARKRWDSVLHFMVGST--AVAAPPATVIGILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRANMTMSQGLDHITNYAADPSKSRLPSASPARADSSLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQ--------LYLWQRERNRIKFEPGELVDV--ANED-FDAVVKHAEDMGVLLWH 448          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: A0A6G0WGX7_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGX7_9STRA)

HSP 1 Score: 317 bits (813), Expect = 7.960e-100
Identity = 188/467 (40.26%), Postives = 259/467 (55.46%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVEAFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQGDVPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRP--------QQQPQQPGGVAAVRKGTREDDAT-VQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWN 460
            N F+YL  LP  +LD LY           W C+A+ QS+  L++Q VMRL+F    V K  L  W++   Q    A+I KL  LR+L       ++ LNP F+E L+ AL +   +PW+          P   + +E+    +W  VL+F+VGS      APP  V+  +E + LMK +     AL ITD GYEFMLK+ H Q WI V   I    R      DE+L F FQ+SYC++ + Y +  LT  Q+ L  D V LGLL+++ +K+TRFY TS+A+NLIFG     G +R         +   QQ       R       A+ + I+VETNF+V AYT S LH AMLS+F+D+  RLPN+ +G +TRES+R AL  GI   Q+ DFL  HAHP +   SPV+PENIADQ        + LW+RER+R+  + G LLD    +ED F  VV++A +   L+W+
Sbjct:    2 NAFEYLGALPGTSLDRLY--------QDPWACQAVFQSMNPLSQQIVMRLLFTTTHVSKDALMHWIQDSAQSKMTAAIEKLCHLRVLRPVQGTNKFGLNPAFQEKLKTALSSLGGSPWEAGRKNLPPEKPIAAADLEQYARKRWDAVLHFMVGST--AVPAPPKEVIGILEHTRLMKPSETDARALHITDTGYEFMLKDIHAQTWIFVLNYIKDIDRKGILSADEMLQFFFQMSYCRMNEYYAVADLTRHQQQLLGDLVQLGLLYRKDSKATRFYTTSLAVNLIFGGMA--GQTRTNITMVQSLEAVHQQASSQVVPRPFASTSSASHLLIVVETNFKVYAYTESTLHIAMLSVFVDIVARLPNLAVGYLTRESIRSALIHGISAEQIYDFLMQHAHPKMLANSPVIPENIADQ--------LYLWQRERNRIKFDAGELLDGFVTTED-FDSVVKYAQDLHVLMWH 447          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: A0A485KU14_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KU14_9STRA)

HSP 1 Score: 313 bits (802), Expect = 3.730e-98
Identity = 195/487 (40.04%), Postives = 275/487 (56.47%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVE--AFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQGDVPLTADRSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRPQ-------QQPQQPGGVAAVRKGTREDDATVQ---IIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWNSPF-----LSSGGGISV 472
            N F++L  LP  ++D LY +DA       W C+A+ QS+  L +Q VMRL+F    ++  +SLL+ WV++  Q+    +I KL  LR+L      +E+ LNP F+E L++AL +   +PW+      A   P +   +E+    +W  VL+F+VGS      APP  V+  +E + LM+ +     AL ITD GYEFMLK+ H Q WI V   I    R      +E+L FLFQ+SYC++ + Y +G LT  Q+ L  D V+LGLLF++  K+TRFY TS+A+NLIFG  +  G +R         +Q     G    +       A      I+VETNF+V AYT S LH AMLS+F+D+  RLPN+ +G +TRES+R AL  GI   Q+ DFL  HAHP +   SPV+PENIADQ        + LW+RER+R+  + G LLD    +ED F  VV +A +   LLW+        +S  GG +V
Sbjct:    2 NAFEFLATLPAASVDRLY-QDA-------WACQAVFQSMEPLGQQIVMRLLFTSQVSYSQESLLE-WVQEPAQQKMIHAIEKLSHLRVLRVVKGQREFVLNPVFQEQLKKALSSLGGSPWEAGRQKLAAEPPISALDLEQYARKRWDAVLHFMVGST--AVPAPPPTVIGILEHTRLMQPSSSDARALHITDTGYEFMLKDVHAQTWIFVLEYIKDIDRRGILSAEEMLQFLFQMSYCRMNEYYAIGDLTRNQQQLLGDLVELGLLFRKGTKATRFYTTSLAVNLIFGGVL--GQTRTSISMVQSLEQVHSASGQQLTKGAVPRPVAVAAHLLIVVETNFKVYAYTESTLHIAMLSVFVDIVARLPNLAVGYLTRESIRSALIHGISAEQIYDFLMQHAHPKMLANSPVIPENIADQ--------LYLWQRERNRIKFDAGELLDGFVTTED-FDTVVNYAQDLDVLLWHDAIHLRLVVSKAGGAAV 466          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: D0NRC9_PHYIT (General transcription factor IIH subunit 4 n=21 Tax=Phytophthora TaxID=4783 RepID=D0NRC9_PHYIT)

HSP 1 Score: 311 bits (798), Expect = 1.980e-97
Identity = 191/480 (39.79%), Postives = 268/480 (55.83%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVEAFVDKSLLKSWV------KKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENLRRALCTANKAPWQ-GDVPLTADRSPPTVS-KIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRPQQQPQQPGGVAAVRKG------------TREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWNSP 462
            + FD+LE LPP  L+ LY           W C+A+ Q+LP LA+Q VMRL+   + V + LL+ WV       K       A+++KL  LR+ +Q   G  Y+ +P F++ L  AL     +PW+ G + L  D      +  +ER   ++W  VL+++VGS       PP  VV  +  + L++ +     AL ITD GYEFMLK+ HVQ WI +   I     T    ++++L FLFQ+SYC+ G  Y +  LT TQR L  DF+D GLLF+++  S RFY TS+A+NLIFG S      + +         A VR G            T +  A + ++VETNF++ AYT S LH AMLS+F+D+  RLPN+ IG ITRES+R AL  GI  +Q+ DFL  HAHP +RR SPV+PENIADQ        + LWERER+R+   +G+L D  +  ED +  V ++A     L W+ P
Sbjct:    2 DAFDFLETLPPATLERLY--------QDPWACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVVPIPGETKRMPPQFNAALQKLEGLRVFVQQDGG--YKPHPTFQKQLMYALSNLGGSPWERGRLHLPRDPENTFAAVDLERYARARWDLVLHYMVGST--AVQEPPQSVVDILLRTKLLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGST----GQKRSHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQ--------IYLWERERNRVQFLEGILFDGFNTKED-YESVRDYAKGLMVLTWSDP 456          
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Match: H3GUR6_PHYRM (General transcription factor IIH subunit 4 n=3 Tax=Phytophthora TaxID=4783 RepID=H3GUR6_PHYRM)

HSP 1 Score: 309 bits (792), Expect = 2.030e-96
Identity = 194/490 (39.59%), Postives = 277/490 (56.53%), Query Frame = 0
Query:    4 NVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHVMRLIFVEAFVDKSLLKSWV-------KKDYQRVHAASIRKLISLRILLQSADGQEYQLNPPFRENL---------RRALCTANKAPWQ-GDVPLTAD-RSPPTVSKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALTLTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRPQQQPQQPGGVAAVRKG------------TREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLDLRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVVPENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEFANNARGLLWNSP 462
            + FD+LE LP   L+ LY           W C+A+ Q+LP LA+Q VMRL+   A V ++LL+ WV       K+   + HAA + KL  LR+ +Q  DG  Y+ +P F++ L           AL     +PW+ G + L  D  +    + +ER   ++W  VL+++VGS       PP  VV  +  + L++++     AL ITD GYEFMLK+ HVQ WI +   I     T    ++++L FLFQ+SYC+ G+ Y +  LT TQR L  DF+D GLLF+++  S RFY TS+A+NLIFG S      + + Q       A VR G            T +  A + ++VETNF++ AYT S LH AMLS+F+D+  RLPN+ IG ITRES+R AL  GI  +Q+ DFL  HAHP +RR +PV+PENIADQ        + LWERER+R+   +G+L D  ++ ED +  V ++A + + L W  P
Sbjct:    2 DAFDFLETLPTATLERLY--------QDPWACQALFQALPPLAQQFVMRLLPSNAAVPRALLEQWVVPEPGDAKRMPPQFHAA-LHKLEGLRVFVQQ-DGA-YRPHPTFQKQLMVKKYEQCYHYALSNLGGSPWERGRLQLPKDPENTYAAADLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLLQSSGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPTSDRFYTTSLAVNLIFGGST----GQKRSQVSLTSSFAGVRAGVKSQVADPRHAPTADHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNMAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNTPVIPENIADQ--------IYLWERERNRVQFLEGILFDGFNSKED-YESVRDYAEDLKVLTWMDP 465          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHY7_ECTSI1.590e-25872.82General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5KJZ4_9PHAE1.150e-17470.84General transcription factor IIH subunit 4 n=1 Tax... [more]
W4FDT1_9STRA3.210e-10240.85General transcription factor IIH subunit 4 n=1 Tax... [more]
F0W5B1_9STRA1.350e-10140.88General transcription factor IIH subunit 4 n=2 Tax... [more]
A0A836C856_9STRA4.600e-10142.98General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A024TBA0_9STRA1.040e-10042.00General transcription factor IIH subunit 4 n=2 Tax... [more]
A0A6G0WGX7_9STRA7.960e-10040.26General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A485KU14_9STRA3.730e-9840.04General transcription factor IIH subunit 4 n=1 Tax... [more]
D0NRC9_PHYIT1.980e-9739.79General transcription factor IIH subunit 4 n=21 Ta... [more]
H3GUR6_PHYRM2.030e-9639.59General transcription factor IIH subunit 4 n=3 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004598Transcription factor TFIIH subunit p52/Tfb2PFAMPF03849Tfb2coord: 7..391
e-value: 2.2E-105
score: 352.5
IPR004598Transcription factor TFIIH subunit p52/Tfb2PANTHERPTHR13152TFIIH, POLYPEPTIDE 4coord: 2..461
NoneNo IPR availableGENE3D3.30.70.2610coord: 413..464
e-value: 2.2E-5
score: 26.5
IPR040662Transcription factor Tfb2, C-terminal domainPFAMPF18307Tfb2_Ccoord: 416..496
e-value: 1.6E-7
score: 31.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig902contigF-serratus_M_contig902:58886..66712 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig902.20428.1mRNA_F-serratus_M_contig902.20428.1Fucus serratus malemRNAF-serratus_M_contig902 58344..66712 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig902.20428.1 ID=prot_F-serratus_M_contig902.20428.1|Name=mRNA_F-serratus_M_contig902.20428.1|organism=Fucus serratus male|type=polypeptide|length=502bp
MNSNVFDYLERLPPDALDTLYGKDAGSSSHGQWTCRAMLQSLPQLAKQHV
MRLIFVEAFVDKSLLKSWVKKDYQRVHAASIRKLISLRILLQSADGQEYQ
LNPPFRENLRRALCTANKAPWQGDVPLTADRSPPTVSKIERQMHSQWQDV
LYFLVGSDEEGRSAPPARVVKFMEESGLMKTTRGGGALRITDKGYEFMLK
ETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKLGDAYPLGALT
LTQRDLAQDFVDLGLLFKRKAKSTRFYPTSIAINLIFGSSVSSGDSRPQQ
QPQQPGGVAAVRKGTREDDATVQIIVETNFQVVAYTRSKLHFAMLSLFLD
LRTRLPNVIIGAITRESMRRALATGIKGRQVLDFLKCHAHPVVRRRSPVV
PENIADQASDFSCGSVLLWERERDRMIKEDGVLLDVSHASEDTFRQVVEF
ANNARGLLWNSPFLSSGGGISVGDTWTSGKKLIVVAPGIAGVLTEFIERA
L*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2
IPR040662Tfb2_C