prot_F-serratus_M_contig802.19423.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig802.19423.1
Unique Name	prot_F-serratus_M_contig802.19423.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	661

Homology

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A6H5JUS6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUS6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.030e-34
Identity = 138/274 (50.36%), Postives = 156/274 (56.93%), Query Frame = 0

Query:  141 ESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQDGGXXXXXXXXXXXXXXXXXXXFRQGGGMREDFGRRGQDSRGYEPPQGFGSGXXXGGSHRGGDGFSRRGTHEGAEPGFGSXXXXXXXXXXXXXXXXXXXXXLAGPPRPDAPQGGDNPPPTGERRRLKLQPRTKPPTEIAAV--ANP----TKKASIFGGGKAHDEIAYERAKAA 408
            E E++PVPD PP+KALVGNLPY   ++DI +FF +C V D+YLVKDR TG  KGFGYVTF  K  L  AL M Q  LGGR++RVEVAKPQRGGGNRR      XXXXXXXXXXXXXXXXXX +RQG   R+D+                                 R+    G+  G G        XX  XXXXXXXXXX                       RLKL PR+KP T  AA   A P    +KKASIFGGGKAHDE AYE+AKAA
Sbjct:   72 EYEEVPVPDAPPYKALVGNLPYSAHENDIADFFHQCRVDDVYLVKDRTTGQAKGFGYVTFGDKQSLLDALKMTQRNLGGRDVRVEVAKPQRGGGNRRXXXXX-XXXXXXXXXXXXXXXXXXGYRQGXSGRDDYXXXXXXXXXXXXXX-----------------XXRQREDRGSSGGGGQDGPIGAGXXDVXXXXXXXXXXXX--------------------XRLKLAPRSKPATGQAAAGAAXPAPASSKKASIFGGGKAHDEFAYEKAKAA 307

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A3N4KIL9_9PEZI (RNA-binding domain-containing protein n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KIL9_9PEZI)

HSP 1 Score: 99.4 bits (246), Expect = 3.160e-18
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 0

Query:  143 EQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRR 237
            EQLP+PD+PPF A VGNL + + +++I EFF++C V+++ LV+D+     KGFGYV F  K+GL AA+ +   QL GRNIR+ VA P +  G  R
Sbjct:   79 EQLPIPDKPPFTAHVGNLSFDVSENEISEFFEKCDVSNVRLVRDKMEDRPKGFGYVEFNTKEGLIAAMELNGSQLSGRNIRINVADPPKDRGEER 173

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A0D1ZLH0_9EURO (RRM domain-containing protein n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1ZLH0_9EURO)

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0

Query:  143 EQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQD 241
            EQLP+P EPPF A + NL +     DI +FF++C VT++ +V+D+     KGFGYV F   DGL+AAL ++   L GR +RV VA+P +GG + R F D
Sbjct:   72 EQLPLPTEPPFTAHLANLSFDATQGDISDFFRDCSVTNVRIVEDKMDRKPKGFGYVEFGTLDGLKAALALSGSNLAGRQVRVSVAEPPKGGQDSRDFSD 170

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A3N4KGI1_9PEZI (RNA-binding domain-containing protein n=1 Tax=Morchella conica CCBAS932 TaxID=1392247 RepID=A0A3N4KGI1_9PEZI)

HSP 1 Score: 88.6 bits (218), Expect = 5.760e-16
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0

Query:  141 ESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQR 231
            E E  P+PD PP+ A +GNL + I   +I +FF EC V  + LV+D+     KGFGYV F AK+GL AA  +  +++ GRNIRV +A+P++
Sbjct:  156 EREITPIPDNPPYTAHIGNLSFDIEVQEISDFFSECDVKTVRLVRDKPNDRPKGFGYVEFNAKEGLIAATELNGVKVCGRNIRVNIARPRK 246

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: UPI001069F6B7 (glycine-rich RNA-binding protein-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069F6B7)

HSP 1 Score: 84.0 bits (206), Expect = 1.630e-15
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0

Query:  152 PFKALVGNLPYRIRDDDIMEFFQECG-VTDIYLVKDRETGDMKGFGYVTFE-AKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRG----FQDGG 243
            P K  VGNLP++I  ++I E F++ G V D+ +V DR+TG  +GFG+VTFE  +D  +A  G+ + +LGGRNIRV  ++P+R GG  RG    + DGG
Sbjct:    4 PRKVHVGNLPFKISQEEIREAFEKYGAVEDVIIVSDRDTGRPRGFGFVTFENEEDAKEAINGLDETELGGRNIRVSESRPRREGGGGRGGGRSYGDGG 101

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A1V9Z2N8_9STRA (RRM domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2N8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.860e-15
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 0

Query:  138 GAHESEQ----LPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQDG 242
            G+HE EQ    LPVPD PPFK+ VGNLPY++ +DD+ +FF+   V D+++ +D +TG  KGF YV F  ++ L  AL      +  R IR++VA  ++GG +  G + G
Sbjct:   66 GSHEFEQKREKLPVPDRPPFKSYVGNLPYQMNEDDLADFFKGLNVIDVHIPQDYQTGRPKGFAYVEFGDRESLVQALTADGDLIDKRPIRIDVAGEKKGGRDTFGKRGG 174

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A139AS84_GONPJ (RNA-binding domain-containing protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AS84_GONPJ)

HSP 1 Score: 89.0 bits (219), Expect = 4.150e-15
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 0

Query:  132 YDNKGGGAHESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQD 241
            YD   G +    Q PVP+ PP+ A +GNLPY + ++D+ EFF    +  + LVKDRE+G  KG+GYV FE +  L+ A+        GR +R++VA+P+ G   R  F D
Sbjct:   48 YDRDSGRSARPRQ-PVPNNPPYTAFLGNLPYDVHEEDLREFFHPLKLRSVRLVKDRESGQSKGYGYVEFEERGDLEMAVSDGGADFKGRRVRIDVAEPKEG--QRSTFDD 154

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A8H7IPR6_9PEZI (RRM domain-containing protein n=2 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A8H7IPR6_9PEZI)

HSP 1 Score: 89.4 bits (220), Expect = 4.560e-15
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0

Query:  137 GGAHESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQD 241
            GG    E+LP+P +PP+ A +GNL +   + DI +FF +C VT + +V+D+     KGFGYV F   DGL+ AL ++  Q  GRNIRV VA+P +     R F D
Sbjct:   56 GGYATREELPLPTKPPYTAHLGNLSFDATEGDIHDFFMDCDVTSVRIVEDKLDRKPKGFGYVEFGTLDGLKKALALSGTQFQGRNIRVSVAEPPKERMETRVFDD 160

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A849I1E0_9GAMM (RNA-binding protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849I1E0_9GAMM)

HSP 1 Score: 80.9 bits (198), Expect = 6.860e-15
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 0

Query:  154 KALVGNLPYRIRDDDIMEFFQECG-VTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKP-----QRGGGNRRG 238
            K  +GNLP+++   D+   F   G +TD++LVKDR+TG +KGFG++TF      QAAL M + + GGRN++V +AK      + GGG  RG
Sbjct:    4 KIYIGNLPFKLEPADLRSAFARFGEITDLFLVKDRDTGRLKGFGFITFADASSAQAALEMNEQEFGGRNLKVSIAKERDDRGEGGGGGSRG 94

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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: I2K2T7_DEKBR (Eukaryotic translation initiation factor 4b (Eif-4b) (Fragment) n=1 Tax=Brettanomyces bruxellensis AWRI1499 TaxID=1124627 RepID=I2K2T7_DEKBR)

HSP 1 Score: 84.0 bits (206), Expect = 1.290e-14
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 0

Query:  138 GAHESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQEC--------GVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGG 234
            G+ E E+ PVPDEPPF A V NL + + + ++ E F E          +TD Y  KDR TG ++GF +VTF  K  L+ AL ++  +L GR + + VA P R GG
Sbjct:   73 GSREXEEYPVPDEPPFTARVNNLAHEMDESELYELFVEGLGLKAAKEEITDFYAPKDRATGQLRGFAFVTFAEKALLEQALTLSPTELAGRTVYISVAAPDRRGG 177

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUS6_9PHAE	1.030e-34	50.36	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A3N4KIL9_9PEZI	3.160e-18	49.47	RNA-binding domain-containing protein n=3 Tax=Morc...	[more]
A0A0D1ZLH0_9EURO	1.200e-17	47.47	RRM domain-containing protein n=1 Tax=Exophiala si...	[more]
A0A3N4KGI1_9PEZI	5.760e-16	46.15	RNA-binding domain-containing protein n=1 Tax=Morc...	[more]
UPI001069F6B7	1.630e-15	46.94	glycine-rich RNA-binding protein-like n=1 Tax=Dend...	[more]
A0A1V9Z2N8_9STRA	1.860e-15	43.12	RRM domain-containing protein n=1 Tax=Achlya hypog...	[more]
A0A139AS84_GONPJ	4.150e-15	40.91	RNA-binding domain-containing protein (Fragment) n...	[more]
A0A8H7IPR6_9PEZI	4.560e-15	43.81	RRM domain-containing protein n=2 Tax=Lasiodiplodi...	[more]
A0A849I1E0_9GAMM	6.860e-15	43.96	RNA-binding protein n=1 Tax=Legionellales bacteriu...	[more]
I2K2T7_DEKBR	1.290e-14	41.90	Eukaryotic translation initiation factor 4b (Eif-4...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 154..225 e-value: 1.5E-19 score: 81.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 157..223 e-value: 6.9E-14 score: 51.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 153..229 score: 14.88
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 139..234 e-value: 1.2E-22 score: 82.0
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 117..246
None	No IPR available	PANTHER	PTHR23236:SF50	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B	coord: 117..246
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 142..261

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig802	contig	F-serratus_M_contig802:190753..199905 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig802.19423.1	mRNA_F-serratus_M_contig802.19423.1	Fucus serratus male	mRNA	F-serratus_M_contig802 188823..212522 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig802.19423.1 ID=prot_F-serratus_M_contig802.19423.1|Name=mRNA_F-serratus_M_contig802.19423.1|organism=Fucus serratus male|type=polypeptide|length=661bp
MSKDWAEADEETFPDVPEAAPPTPGQSSSPPGEKHVENDNYRDGRGGGGG
YGRDGGGGGYGRDGGGGGYGRDGGGRGYSRDGGGGGYGRDGGGGGFSRDG
GGGGFGRDGGGGGYGRDGGGRSGGYGQSGGGYDNKGGGAHESEQLPVPDE
PPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTF
EAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQDGGFGGGRRS
YDQPQQGGGGGGFRQGGGMREDFGRRGQDSRGYEPPQGFGSGGFGGGSHR
GGDGFSRRGTHEGAEPGFGSFGSRGRDSRDRDDQSATSADGLAGPPRPDA
PQGGDNPPPTGERRRLKLQPRTKPPTEIAAVANPTKKASIFGGGKAHDEI
AYERAKAAAAANKEKDKDNGSAGREGGGGTRGGRGSPGGRGPSAGRGTGR
PGRGGVRSGVGGGGSNRGSDKGSDKGSDKGDAPKAGGTRPPTGDAPAAVA
TGSTPKPTGWGADAPPAAPANLSAQDSGEDGWHSAKPHQGNKHPPQGGKK
PPQGGKPRHEGNKQPQQDGKQPNQGGKQSNYSGKQSHQGGKQPHQGGKQP
NQGGKQPHQGGKPSGGKSSGGKLAPVAATTEAQVGDSTAAAATTVDNKFS
ALNVEDDDDE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf