prot_F-serratus_M_contig786.19128.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig786.19128.1
Unique Nameprot_F-serratus_M_contig786.19128.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length297
Homology
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BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: D8LCY2_ECTSI (Holliday junction resolvase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY2_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 7.230e-74
Identity = 128/205 (62.44%), Postives = 155/205 (75.61%), Query Frame = 0 
Query:   24 QESVVIASSRYLRATPRNLKVQAGT----PRG--QHRRSRNSTPLKEDLPRILTAAGMVKLCMKPENQSLPLVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRTADLEDEIAAMVILQ 222
            ++S++IA  R   A  R L    G     PRG  +HR  RN  P K+DLP ILTAAGMVKLC  P N+  PLVGLDVAP+NFGVA+SDET+T A P  +V RR   KKLDP+  + KL ++VE+ +AC LVVGWPLS+SG A+GQCLMVLQFLRQL L+GK+DIPVTL+DER+TSVEAR IL++DGLGR+ A+ EDE AAMVILQ
Sbjct:   29 RQSLLIAPHRPSAAPARRLTTTGGAAGAPPRGYSRHRHPRNPVPGKDDLPTILTAAGMVKLCGLPGNRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLDPALVIGKLREIVEDCSACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLGRKIAEREDETAAMVILQ 233
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BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A7S4D9E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9E5_HETAK)

HSP 1 Score: 102 bits (255), Expect = 8.130e-23
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 0 
Query:   80 MKPENQSLPLVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALR-KLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGR-RTADLEDEIAAMVILQ 222
            +K +++S  ++GLD+A TN GVA SD T +FA P  K+ R  P  + D  + +  KL K++ E  A   VVGWPL   G    QC  VL FL  +    ++ IP+ LWDER TSV+AR  L +   G+ R   +ED++AA +IL+
Sbjct:   28 LKDQSRSTCVLGLDIAETNIGVAFSDATYSFASPLKKLQRMRPTYRQDSMQNISSKLQKVIAEQQAIGAVVGWPLMPDGSLGMQCGHVLAFLTGMHQINEVQIPMVLWDERGTSVDARSFLWDAKTGKKRMKQMEDQVAAALILK 172
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BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: UPI00166D357B (Holliday junction resolvase RuvX n=1 Tax=Edaphobacter acidisoli TaxID=2040573 RepID=UPI00166D357B)

HSP 1 Score: 77.4 bits (189), Expect = 8.180e-14
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRTAD-LEDEIAAMVILQ 222
            ++GLDV     GVA+SD     A P M + R+  G      E LR L +LV +     +VVG PL  SG        V +F  +LR +    +PV LWDERL+SV A +IL E G G+R    L D++AA+VIL+
Sbjct:    6 VMGLDVGKVRVGVALSDPLGYTAQPLMTLWRKGRG------EDLRSLMRLVRKHEVTEIVVGNPLHLSGDVSAWAKKVQEFAAELRERS--GLPVHLWDERLSSVAAHEILDEAGHGKRDRKHLIDQVAAVVILR 132
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BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A3R7VUD7_9PROT (Putative pre-16S rRNA nuclease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3R7VUD7_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-13
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDG--LGRRTADLEDEIAAMVILQ 222
            L+G+D      G+A+SD  R+ A P   ++R   GKK   ++A+R L  ++ E N   +V+GWPL   G    +C   + F R LR    I++P+ LWDERLTS      L  D      +   + D++AA++ILQ
Sbjct:   11 LLGIDFGDKKIGIAVSDGMRSVASPVETLVR---GKKF-AADAVR-LTDIIAERNIQGIVLGWPLQMDGTPGPRCQATIAFARNLRTLAGIELPILLWDERLTSAMVEKFLINDMDMTRNKRRKVVDQMAAVIILQ 141
[Close]
BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A133ZBR1_9FIRM (Putative pre-16S rRNA nuclease n=4 Tax=Lachnospiraceae TaxID=186803 RepID=A0A133ZBR1_9FIRM)

HSP 1 Score: 75.5 bits (184), Expect = 3.460e-13
Identity = 48/135 (35.56%), Postives = 79/135 (58.52%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRTA-DLEDEIAAMVILQ 222
            ++GLD      GVAISD     A P  + + R    KL  S  L ++ K+VEE+N   +VVG P++ +G +  +  + ++F+   +LK ++D+P+ + DERLT+VEA +IL E G+ +       D +AA +IL+
Sbjct:    7 IMGLDYGSKTIGVAISDSLGLTAQP-FETIERDKENKLRRS--LARIAKIVEENNIKEIVVGLPINMNGKSNERVALTMEFVE--KLKKRVDVPIVMQDERLTTVEADEILDESGVKKENRKQFIDMVAAGIILR 136
[Close]
BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A496NXB7_9FIRM (Putative pre-16S rRNA nuclease n=3 Tax=Lachnospiraceae TaxID=186803 RepID=A0A496NXB7_9FIRM)

HSP 1 Score: 75.1 bits (183), Expect = 5.030e-13
Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRTA-DLEDEIAAMVILQ 222
            ++GLD      GVAISD     A P  + + R    KL  S  L K+ K+VEE N   +VVG P++ +G +  +  + L+F+   +LK ++D+P+ + DERLT+VEA +IL E G+ +       D +AA +IL+
Sbjct:    7 IMGLDYGSKTIGVAISDSLGLTAQP-FETIERSKENKLRRS--LAKIAKIVEEKNIKKIVVGLPVNMNGKSGKRVSLTLEFVE--KLKQRVDVPIIMQDERLTTVEADEILDESGVKKENRKQFIDMVAAGIILR 136
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BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A1I6MSF1_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Granulicella pectinivorans TaxID=474950 RepID=A0A1I6MSF1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 5.150e-13
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRTADLEDEIAAMVILQ 222
            ++ LDV     GVA++D     A P + V R+  G      E LR L +LV +     +VVG PL  SG      + V +F  +L+   K++ PVTLWDERL++  A +IL E G G     + D++AA+VIL+
Sbjct:    6 VMALDVGKVRIGVAMTDGLGITAQPLLTVWRKGRG------EDLRSLARLVRKHAVVEVVVGNPLHLSGDEMPWGVKVREFAGELQ--AKVECPVTLWDERLSTTAAHEILDEAGYGTDRKGIIDQVAAVVILE 131
[Close]
BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: UPI0018D9C343 (Holliday junction resolvase RuvX n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=UPI0018D9C343)

HSP 1 Score: 74.7 bits (182), Expect = 5.900e-13
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRTADLE-DEIAAMVILQ 222
            ++GLD    N GVA+SD  R  A     V +R  G +LD      ++ +LV+E     +VVG P + +G    +  + + F  Q+RLK  +DIPV LWDERLT+V A   L E  + RR   L  D++AA +ILQ
Sbjct:    3 VMGLDYGDRNIGVAVSDAFRWTAQGLTTVEKRRDGGELD------RIAELVKEHEVSEMVVGLPKNMNGSIGPRGEICIAFADQIRLK--LDIPVHLWDERLTTVAAERTLLEADVSRRKRKLVIDKMAATLILQ 129
[Close]
BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A382HVF7_9ZZZZ (YqgFc domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382HVF7_9ZZZZ)

HSP 1 Score: 74.7 bits (182), Expect = 6.810e-13
Identity = 53/137 (38.69%), Postives = 72/137 (52.55%), Query Frame = 0 
Query:   88 PLVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGR--RTADLEDEIAAMVILQ 222
            PL+ LD      GVAISDE   FA P   +  +  G+KL       ++  LV   N   ++VG PL+  G    Q  +  +++ QLR    +DIP+T WDERLTS++A  IL E G  R  R +   D  AA +ILQ
Sbjct:    5 PLMALDYGSRRTGVAISDELALFAHPRSAL--KGEGRKL-----FSQIKSLVSSENISEVIVGLPLTLEGGDSEQTKLTRKWIEQLR--EVLDIPITEWDERLTSIQADKILNEAGRSRKNRRSGERDSAAAAIILQ 132
[Close]
BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Match: A0A6L9HL51_9FIRM (Putative pre-16S rRNA nuclease n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A6L9HL51_9FIRM)

HSP 1 Score: 74.7 bits (182), Expect = 6.970e-13
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 0 
Query:   89 LVGLDVAPTNFGVAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVGWPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILREDGLGRRT-ADLEDEIAAMVILQ 222
            ++GLD      GVA+SDE    A   ++++RR    KL     L ++ +LV   N   +V+G+P   +     +C + + F  +L  +   ++PV LWDERLT+  A+DI+ E G+ R +  +  DE+AAM+ILQ
Sbjct:    3 ILGLDFGSRTVGVAVSDELMLTAQ-GVEIIRRKSPNKL--RRTLARIEELVISYNVEKIVLGYPKHMNNTEGERCRLTIDFKEKLEYR--TELPVVLWDERLTTAAAKDIMIESGIRRESRGEYVDELAAMLILQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig786.19128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY2_ECTSI7.230e-7462.44Holliday junction resolvase-like protein n=1 Tax=E... [more]
A0A7S4D9E5_HETAK8.130e-2341.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI00166D357B8.180e-1440.74Holliday junction resolvase RuvX n=1 Tax=Edaphobac... [more]
A0A3R7VUD7_9PROT1.030e-1335.29Putative pre-16S rRNA nuclease n=2 Tax=Alphaproteo... [more]
A0A133ZBR1_9FIRM3.460e-1335.56Putative pre-16S rRNA nuclease n=4 Tax=Lachnospira... [more]
A0A496NXB7_9FIRM5.030e-1337.04Putative pre-16S rRNA nuclease n=3 Tax=Lachnospira... [more]
A0A1I6MSF1_9BACT5.150e-1337.31Putative pre-16S rRNA nuclease n=1 Tax=Granulicell... [more]
UPI0018D9C3435.900e-1339.26Holliday junction resolvase RuvX n=2 Tax=unclassif... [more]
A0A382HVF7_9ZZZZ6.810e-1338.69YqgFc domain-containing protein n=1 Tax=marine met... [more]
A0A6L9HL51_9FIRM6.970e-1334.81Putative pre-16S rRNA nuclease n=1 Tax=Lachnospira... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 87..195
e-value: 6.6E-11
score: 52.2
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 90..222
e-value: 1.5E-23
score: 83.7
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMTIGR00250TIGR00250coord: 91..222
e-value: 2.3E-15
score: 54.8
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317FAMILY NOT NAMEDcoord: 85..222
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 87..229
score: 17.287
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 86..228
e-value: 9.8E-28
score: 98.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 89..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig786contigF-serratus_M_contig786:259782..296188 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig786.19128.1mRNA_F-serratus_M_contig786.19128.1Fucus serratus malemRNAF-serratus_M_contig786 259511..296426 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig786.19128.1 ID=prot_F-serratus_M_contig786.19128.1|Name=mRNA_F-serratus_M_contig786.19128.1|organism=Fucus serratus male|type=polypeptide|length=297bp
MLLRSLSRYRNRRNGMPTSLVKVQESVVIASSRYLRATPRNLKVQAGTPR
GQHRRSRNSTPLKEDLPRILTAAGMVKLCMKPENQSLPLVGLDVAPTNFG
VAISDETRTFALPAMKVLRRHPGKKLDPSEALRKLGKLVEESNACALVVG
WPLSRSGVAKGQCLMVLQFLRQLRLKGKIDIPVTLWDERLTSVEARDILR
EDGLGRRTADLEDEIAAMVILQVGHVQQAVLGQLGQSLSRLFTPPQPCLA
WPILRIVGHKLRDWFLFLVFGVDRAERSEAALAVPIEKPETLRVRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR005227YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR012337RNaseH-like_sf