prot_F-serratus_M_contig76.18853.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig76.18853.1
Unique Name	prot_F-serratus_M_contig76.18853.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	327

Homology

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 4.350e-60
Identity = 104/140 (74.29%), Postives = 112/140 (80.00%), Query Frame = 0

Query:  160 FLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGVSYAEQQVSGRPS-SPVLDTSSLAALEAAKVTALTFGRSRDND 298
             LSAEEAWRYCC RR DFP MFAVYRHFR RSFTV  GHKYGAH+VLYEGPPDE HSRYCVHV G    GG GDSW H+KTMTRLMPDVAKSLL+CGV+Y  Q  +     SP +DTSSLAAL AA+VTAL F RSRD+D
Sbjct:  189 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTG---GGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSD 325

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: A0A482RRC4_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRC4_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 2.210e-11
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 0

Query:  158 EEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGV 257
            E  LS E+ +R C  +   F    AVY HFRA +F V++  ++G  F LY  PP   HS + V V      GG   +W  +  +TR+ PDV K+LLLC V
Sbjct:   95 EGILSCEDFFRVCVQQDPLFSRRLAVYSHFRALNFVVRSALQFGGSFALYRAPPSRRHSEHLVLVL----RGGEALTWRELSALTRIAPDVMKTLLLCWV 190

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: M4BAF9_HYAAE (tRNA-intron lyase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAF9_HYAAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.540e-9
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0

Query:  177 FPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGVS 258
            F   F +Y+HFR R +  + G  YGAH+VLY G  + +HS Y V+V+      G   SW  I++ TR+  D  K++LLC V+
Sbjct:   96 FTRTFVIYQHFRRRGWIPRPGLNYGAHYVLYRGSAEAFHSEYIVYVQ----RDGEVSSWNSIQSHTRIAADAKKTVLLCTVT 173

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: A0A2Z7C055_9LAMI (tRNA-intron lyase n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C055_9LAMI)

HSP 1 Score: 64.3 bits (155), Expect = 2.940e-8
Identity = 48/154 (31.17%), Postives = 66/154 (42.86%), Query Frame = 0

Query:  107 LSLEEAFYLNFVDKCLALKGEARLLRPSSPRKRLREAGNPLSKSSDDDQQAEEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDS--WGHIKTMTRLMPDVAKSLLLCGVS 258
            LSLEEAFYL +V KC+ + G                 GN               +S  E  +Y   ++  FP++F  Y H R +++ V+ G +YGA FV Y   P   HS Y V V         G    W   +   RL   VAK+LL+  +S
Sbjct:   77 LSLEEAFYLCYVMKCIKIVG-----------------GNNCP------------ISDTELLQYIAPKKDRFPVLFKAYAHLRIKNWVVRPGSQYGADFVAYRHHPALVHSEYAVLVISEEDGDANGRLRVWSDFQCTLRLCGSVAKTLLVLFIS 201

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: A0A0K9QXX2_SPIOL (tRNA-intron lyase n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QXX2_SPIOL)

HSP 1 Score: 62.8 bits (151), Expect = 8.430e-8
Identity = 42/151 (27.81%), Postives = 66/151 (43.71%), Query Frame = 0

Query:  107 LSLEEAFYLNFVDKCLALKGEARLLRPSSPRKRLREAGNPLSKSSDDDQQAEEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGV 257
            L+L+EAFYL ++ KCL ++G+  +++                             S EE W++   + + FP  F  Y H R  ++ V++G +YG  +V Y   P   HS Y + V       G    W  +    RL   VAK+LL+  V
Sbjct:   77 LTLQEAFYLCYMLKCLKIEGDDGVVK-----------------------------SYEELWQFMISKFEMFPEFFKAYSHMRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDCGRLKLWSDMYGTVRLCGGVAKTLLVLHV 198

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 62.8 bits (151), Expect = 2.060e-7
Identity = 33/89 (37.08%), Postives = 42/89 (47.19%), Query Frame = 0

Query:  174 RQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGVSYAEQ 262
            + +F L    Y   RAR   V+ G KYG HF +YEG PDE H+RY VH    +        W  I    RL   V K +L C +   E+
Sbjct:  256 QDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIA----MWPEISRTVRLSGGVRKEILFCRIGDGEK 340

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 6.170e-7
Identity = 36/99 (36.36%), Postives = 46/99 (46.46%), Query Frame = 0

Query:  159 EFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGV 257
            E LSA++        + +F L    Y   R+R   V+ G KYG HF +YEG PDE H+RY VH    +        W  I    RL   V K +L C V
Sbjct:  240 EVLSADDIKSIGRKSQNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQDSKVA----MWPEISRTVRLSGGVRKEILFCRV 334

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: D8UJ81_VOLCA (tRNA-intron lyase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UJ81_VOLCA)

HSP 1 Score: 62.0 bits (149), Expect = 7.570e-7
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 0

Query:  107 LSLEEAFYLNFVDKCLALKGEARLLRPSSPRKRLREAGNPLSKSSDDDQQAEEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGD----------SWGHIKTMTRLMPDVAKSLLL 254
            L+LEEAF+L++V +CL    E   L P+ P          +  +++D Q     L  E  W  C G R +F   +A Y H + + +  ++G  YG  FV+Y+  P   HS + V V    S  GG            SW  ++   RL+  V K L+L
Sbjct:  272 LTLEEAFFLHYVLRCL----EVYELHPALP----------IPAAAEDVQ----LLDTEALWNSCRGIRSNFVTSYAAYHHLKCKGWIPRSGLLYGVDFVVYQLHPVGAHSDFGVLVMPLGSGPGGSSRSGGPHAPPLSWLDLQITNRLINQVVKRLVL 411

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BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: A0A0K9Q947_SPIOL (tRNA-intron lyase n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9Q947_SPIOL)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-6
Identity = 45/155 (29.03%), Postives = 67/155 (43.23%), Query Frame = 0

Query:  107 LSLEEAFYLNFVDKCLALKGEARLLRPSSPRKRLREAGNPLSKSSDDDQQAEEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHV----RGCASSGGGGDSWGHIKTMTRLMPDVAKSLLLCGV 257
            L+L+EAFYL ++ KCL ++G                 G+ + K+             EE WR      + FP  F  Y H R  ++ V++G +YG  +V Y   P   HS Y + V    +   +S G    W  +    RL   VAK+LL+  V
Sbjct:   74 LTLQEAFYLCYMLKCLKIEG-----------------GDGVVKTY------------EELWRLIISEIEMFPEFFKAYTHLRMNNWVVKSGSQYGVDYVAYRHHPALVHSEYAILVLSGRKDSGNSSGRLKLWSDLYGTIRLCGGVAKTLLVLHV 199

[Close]

BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Match: A0A2Z7CZQ4_9LAMI (tRNA-intron lyase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CZQ4_9LAMI)

HSP 1 Score: 58.2 bits (139), Expect = 3.700e-6
Identity = 46/152 (30.26%), Postives = 63/152 (41.45%), Query Frame = 0

Query:  107 LSLEEAFYLNFVDKCLALKGEARLLRPSSPRKRLREAGNPLSKSSDDDQQAEEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKYGAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDS----WGHIKTMTRLMPDVAKSLLL 254
            LSLEEAFYL +V KC+ + G                 GN               LS  E  +Y   ++  FP++   Y + R +++ V+ G +YG  FV Y   P   HS Y V V   +   G  D     W       RL   VAK+LL+
Sbjct:   77 LSLEEAFYLCYVMKCIKIVG-----------------GNNCP------------LSETELLQYMAPKKDRFPVLLKAYTYLRIKNWVVKPGSQYGVDFVAYRHHPALVHSEYAVLV--ISEEDGDEDGRLRVWSDFHCTLRLCGSVAKTLLI 197

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig76.18853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
D8LLV6_ECTSI	4.350e-60	74.29	tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T...	[more]
A0A482RRC4_9ARCH	2.210e-11	40.00	tRNA_int_endo domain-containing protein (Fragment)...	[more]
M4BAF9_HYAAE	5.540e-9	40.24	tRNA-intron lyase n=1 Tax=Hyaloperonospora arabido...	[more]
A0A2Z7C055_9LAMI	2.940e-8	31.17	tRNA-intron lyase n=2 Tax=Dorcoceras hygrometricum...	[more]
A0A0K9QXX2_SPIOL	8.430e-8	27.81	tRNA-intron lyase n=1 Tax=Spinacia oleracea TaxID=...	[more]
M4YIW8_THEXX	2.060e-7	37.08	tRNA intron endonuclease n=1 Tax=Thermoplasmatales...	[more]
A0A0W7TI51_9ARCH	6.170e-7	36.36	Endonuclease n=1 Tax=Candidatus Methanomethylophil...	[more]
D8UJ81_VOLCA	7.570e-7	30.38	tRNA-intron lyase n=1 Tax=Volvox carteri f. nagari...	[more]
A0A0K9Q947_SPIOL	1.500e-6	29.03	tRNA-intron lyase n=1 Tax=Spinacia oleracea TaxID=...	[more]
A0A2Z7CZQ4_9LAMI	3.700e-6	30.26	tRNA-intron lyase n=1 Tax=Dorcoceras hygrometricum...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006677	tRNA intron endonuclease, catalytic domain-like	PFAM	PF01974	tRNA_int_endo	coord: 177..258 e-value: 8.7E-15 score: 54.6
IPR011856	tRNA endonuclease-like domain superfamily	GENE3D	3.40.1350.10		coord: 174..266 e-value: 5.7E-17 score: 63.6
IPR006676	tRNA-splicing endonuclease	PANTHER	PTHR21227	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	coord: 98..292
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 10..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 15..326
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..9
IPR036167	tRNA intron endonuclease, catalytic domain-like superfamily	SUPERFAMILY	53032	tRNA-intron endonuclease catalytic domain-like	coord: 176..259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig76	contig	F-serratus_M_contig76:118950..125721 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig76.18853.1	mRNA_F-serratus_M_contig76.18853.1	Fucus serratus male	mRNA	F-serratus_M_contig76 118844..126446 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig76.18853.1 ID=prot_F-serratus_M_contig76.18853.1|Name=mRNA_F-serratus_M_contig76.18853.1|organism=Fucus serratus male|type=polypeptide|length=327bp
MAVLQALFFGDVACLDFEAHPSDDSTGNHSDPRQDYIRREQGGSGNSMLG
YILSHSFGKVVPHGRTFTLPPSSDQSTSSSSSSSSPSSSSSIVAGLDHHH
HHHSLWLSLEEAFYLNFVDKCLALKGEARLLRPSSPRKRLREAGNPLSKS
SDDDQQAEEFLSAEEAWRYCCGRRQDFPLMFAVYRHFRARSFTVQAGHKY
GAHFVLYEGPPDEYHSRYCVHVRGCASSGGGGDSWGHIKTMTRLMPDVAK
SLLLCGVSYAEQQVSGRPSSPVLDTSSLAALEAAKVTALTFGRSRDNDHG
ITAGSSPGTTALKGRGVTRRSPNPMA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006677	tRNA_intron_Endonuc_cat-like
IPR011856	tRNA_endonuc-like_dom_sf
IPR006676	tRNA_splic
IPR036167	tRNA_intron_Endo_cat-like_sf