prot_F-serratus_M_contig726.18488.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig726.18488.1
Unique Name	prot_F-serratus_M_contig726.18488.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	408

Homology

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BLAST of mRNA_F-serratus_M_contig726.18488.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 8.780e-58
Identity = 187/439 (42.60%), Postives = 217/439 (49.43%), Query Frame = 0

Query:   10 GGARRCYRHNNGSRDSRSRPRSTSVTRLSPNRRSGQGGRTRXXXXXXXXXSPPTAGDRGDRSVHQALCGGIVAXXXXXXXXXXXXXXXXXXXXXXLVAKRNXXXXXXXXXXXXXSSPTSXXXXXXXXXXXXXXXXXXXXXXXEAMIATGRAIASAEPDFSTTGESSGTPEGGEDGSQGGAASSVEKMPAAHLVACTVHHAVAIPCNSRSMRIARTLSAVTATPD--NGVVVGVPMS-----GVPRRVVA-----ADGVVAGCP-----------------------NGGDVA--------GGV-VQDGLEELHEGEAEREGEEDDDEWWAGEEFEEEWAGIFEAFCPEGEERRLPCLAAREPLQGSGVTARVARGILRIADWNESGDLGPDEFALAMYLCRRYRLGEGVPSMLEAWMIPPALREARGCEGNSGRFPAFP 404
            GG RRC RH   +   R   R+T + RL                      +   AG+ G  SVHQALCGGIVA   XXXXXXXXXXXXXX      +  R               SP +                       +AM+ATGRAI++A                  DG    +A     +P+A  V+    + VAIPC S S+R AR L+AVTATP   N VV GVPMS     G      A     A G+ AG P                       N  D A        GGV V DG             EE  ++WWAGEEFEE+WA +FEA+CPEG   R+PCL AREPLQGSGV  R+AR IL+IADW   GDLG DEF+LAMYLCRR RLGEGVPSMLEAWMIPP+LREARGC  N G  PA+P
Sbjct:   12 GGTRRCNRHRQSTGSER---RTTHIRRLDAE----------------ADVAAAAAGEEGG-SVHQALCGGIVAGVLXXXXXXXXXXXXXXVGAS--IVSRRGRDRGDDDVRVVSYSPAAAAAPAAGRGGVAGYGDMVMTRE-QAMLATGRAISTATCAXXXXXXXXXXXXXXADGVA--SAGEALLLPSARPVS----NPVAIPCTSSSIRTARRLTAVTATPAHANNVVFGVPMSCGETGGGANNDTAGGPATAAGLGAGAPTVXXXXXXXXXXXXXXXXXXXXXNIADTARRWLWGGTGGVNVNDGWAXXXXXXXXXXXEEAGEDWWAGEEFEEDWACVFEAYCPEGGSGRMPCLVAREPLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDN-GPSPAYP 420

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig726.18488.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig726.18488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JS12_9PHAE	8.780e-58	42.60	EH domain-containing protein n=1 Tax=Ectocarpus sp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 286..390 e-value: 1.0E-11 score: 46.4
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..79
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 80..106
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 107..407
None	No IPR available	TMHMM	TMhelix		coord: 80..102
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 287..388

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig726	contig	F-serratus_M_contig726:101304..116523 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig726.18488.1	mRNA_F-serratus_M_contig726.18488.1	Fucus serratus male	mRNA	F-serratus_M_contig726 98664..116661 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig726.18488.1 ID=prot_F-serratus_M_contig726.18488.1|Name=mRNA_F-serratus_M_contig726.18488.1|organism=Fucus serratus male|type=polypeptide|length=408bp
MSDETPARAGGARRCYRHNNGSRDSRSRPRSTSVTRLSPNRRSGQGGRTR
RRRARRATSSPPTAGDRGDRSVHQALCGGIVAGVVFGGVLGGILAGAAAV
SAAALVAKRNRRRQAAASASASASSPTSASSSASYPTALSDNASWATMTT
EEAMIATGRAIASAEPDFSTTGESSGTPEGGEDGSQGGAASSVEKMPAAH
LVACTVHHAVAIPCNSRSMRIARTLSAVTATPDNGVVVGVPMSGVPRRVV
AADGVVAGCPNGGDVAGGVVQDGLEELHEGEAEREGEEDDDEWWAGEEFE
EEWAGIFEAFCPEGEERRLPCLAAREPLQGSGVTARVARGILRIADWNES
GDLGPDEFALAMYLCRRYRLGEGVPSMLEAWMIPPALREARGCEGNSGRF
PAFPPRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair