prot_F-serratus_M_contig633.17225.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig633.17225.1
Unique Nameprot_F-serratus_M_contig633.17225.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length562
Homology
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BLAST of mRNA_F-serratus_M_contig633.17225.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.060e-22
Identity = 122/311 (39.23%), Postives = 137/311 (44.05%), Query Frame = 0 
Query:  138 MNMYAQGFQQPFNPAGAYGGKTSQLPHAQ-QHHHQNQFYVNAYANGGGFGGPPLGMQVGVNQAQQQXXXXXXXXXXXXXXXQADGGWIDGGIREGKGGGFSGLSAEANGFVPSNFTPAATSAGGTAGGAAGVDGAAGNV------------------------------------DEASPPHQAPET------------------------------------KRTASWADIVRPDGFRSSSSNNQKTPAKGNASGPGTP---------ATVAPNKVSTMLNAPGAFPVPGAYSGGPSGVGYNALGSGAFA 366
            MNMY Q FQQ +N  G Y  K SQLPH Q Q    N  Y+N Y           G   G + + Q     XXXXXXXXXXX   GGWIDGG+RE  GGGFSGLSAEANGFVPSNFTPA+  AGG            G V                                    D  + P     T                                    KRT SWADIVRP+GFRSS   +QK  A   A+ P +          A    N+VS MLN P AFP PGA+SGG  GVGY+ L +G FA
Sbjct:    1 MNMYGQSFQQSYN-QGGYPSKASQLPHGQLQQPPMNTSYMNTY-----------GSVAGGDGSAQTQQPRXXXXXXXXXXXXXXGGWIDGGLRERGGGGFSGLSAEANGFVPSNFTPASGVAGG------------GEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMPALPTAPSSTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQKRTTSWADIVRPEGFRSS---DQKASA---AAAPSSTKXXXXXXXXAAATSNEVSAMLNTPEAFPAPGAFSGG--GVGYSGLSAGPFA 279
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BLAST of mRNA_F-serratus_M_contig633.17225.1 vs. uniprot
Match: D7G0F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-11
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 0 
Query:  288 KRTASWADIVRPDGFRSSSSNNQKTPAKGNASGPGTPATV--------APNKVSTMLNAPGAFPVPGAYSGGPSGVGYNALGSGAFA 366
            KRT SWADIVRP+GFRSS   +QK  A   A+   T              N+VS MLN PGAFP PGAYSGG  GVGY+ L +G FA
Sbjct:    8 KRTTSWADIVRPEGFRSS---DQKAAAAAGAAPRSTKXXXXXXXXXXXTSNEVSAMLNTPGAFPAPGAYSGG--GVGYSGLSAGPFA 89
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig633.17225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE00_9PHAE5.060e-2239.23YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0F2_ECTSI1.410e-1154.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21704:SF19coord: 198..519
NoneNo IPR availablePANTHERPTHR21704:SF19coord: 49..369
IPR033031SCC2/Nipped-B familyPANTHERPTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDcoord: 198..519
coord: 49..369

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig633contigF-serratus_M_contig633:345401..370272 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig633.17225.1mRNA_F-serratus_M_contig633.17225.1Fucus serratus malemRNAF-serratus_M_contig633 345133..370272 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig633.17225.1 ID=prot_F-serratus_M_contig633.17225.1|Name=mRNA_F-serratus_M_contig633.17225.1|organism=Fucus serratus male|type=polypeptide|length=562bp
MADTVSPASISEIGRILPAGTEVMDGRMAADEASGTPGQEAVSAGSDTQG
VLQDQSQEHSVEHSVESSQVSSQNGAAQGQGYAMGSYNNGGGGGTLGYGF
MQQPGAGAFNGGGPGQQQQPQQQQGYSGGYGYPQFPGMNMYAQGFQQPFN
PAGAYGGKTSQLPHAQQHHHQNQFYVNAYANGGGFGGPPLGMQVGVNQAQ
QQQPQQQQQQAQQPQQSQADGGWIDGGIREGKGGGFSGLSAEANGFVPSN
FTPAATSAGGTAGGAAGVDGAAGNVDEASPPHQAPETKRTASWADIVRPD
GFRSSSSNNQKTPAKGNASGPGTPATVAPNKVSTMLNAPGAFPVPGAYSG
GPSGVGYNALGSGAFASPGLAAGSSSASTPGKQQQNQPQQQQRGSLASGS
VGSGGAGDGNSHEVTATPKGNVADVGVGGGGTETTDSAGFAGTVGVNGGA
VGVAGAGMTNGYPPAQQQQQQQQQPQPQQPQPFQQQGGVPNAGGVLDPGN
GGIGGLYPGNNGQFQHQHQLHQGPAGMAGVFGDSGAEMVGPGAFGGAFLG
GNQTGAGYGFMG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033031SCC2/Nipped-B