prot_F-serratus_M_contig6179.16974.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6179.16974.1
Unique Nameprot_F-serratus_M_contig6179.16974.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length80
Homology
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BLAST of mRNA_F-serratus_M_contig6179.16974.1 vs. uniprot
Match: D8LCS4_ECTSI (Selenoprotein W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 6.960e-32
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 0 
Query:    1 GYGRFYRSLKAQLVAKFGDRISLTATADRGTTGRFEVVLRNTGELLHSKKRRGQGRCEDPREVEALIEQIQNYLDSA 77
            GY RFY  L  QL A FGDRIS   T D G TGRFEVVLRNTGELLHSKK RGQGRCEDPREV+AL++QIQ +LDS+
Sbjct:   70 GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTRGQGRCEDPREVQALVDQIQKFLDSS 146
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BLAST of mRNA_F-serratus_M_contig6179.16974.1 vs. uniprot
Match: A0A2R5GI96_9STRA (Selenoprotein W n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI96_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.610e-19
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0 
Query:    2 YGRFYRSLKAQLVAKFGDRISLTATADRGTTGRFEVVLRNTGELLHSKKRRGQGRCEDPREVEALIEQIQNYLDS 76
            Y +++R+LK QL  +FGD + +    D GTTG FEV L  TG+LLHSK  RGQG+C+   EV+A++++IQ++LDS
Sbjct:  327 YSKYFRALKQQLEEEFGDDVKVVGQEDPGTTGNFEVTLTETGDLLHSKSTRGQGKCQSAAEVQAIVDKIQDFLDS 401
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BLAST of mRNA_F-serratus_M_contig6179.16974.1 vs. uniprot
Match: A0A8J6CBQ7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBQ7_DIALT)

HSP 1 Score: 70.9 bits (172), Expect = 4.060e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 0 
Query:    2 YGRFYRSLKAQLVAKFGDRISLTATADRGTTGRFEVVLRNTGE--LLHSKKRRGQGRCEDPREVEALIEQIQNYLDSA 77
            Y RFY+ LK ++ ++FG R  +    + G+TG FEV L +T    L+HSK +RGQGRCE  +EV+ +++ I+ +L SA
Sbjct:   31 YDRFYQQLKLEIESRFGGRAKVVPIRNAGSTGNFEVRLVSTATPLLIHSKAKRGQGRCESEQEVDDVLDAIEGFLASA 108
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6179.16974.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCS4_ECTSI6.960e-3274.03Selenoprotein W n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A2R5GI96_9STRA4.610e-1950.67Selenoprotein W n=1 Tax=Hondaea fermentalgiana Tax... [more]
A0A8J6CBQ7_DIALT4.060e-1443.59Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 1..78
e-value: 6.3E-15
score: 57.0
IPR011893Selenoprotein, Rdx-typePFAMPF10262Rdxcoord: 6..68
e-value: 7.5E-5
score: 22.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6179contigF-serratus_M_contig6179:4755..4994 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6179.16974.1mRNA_F-serratus_M_contig6179.16974.1Fucus serratus malemRNAF-serratus_M_contig6179 4755..4994 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6179.16974.1 ID=prot_F-serratus_M_contig6179.16974.1|Name=mRNA_F-serratus_M_contig6179.16974.1|organism=Fucus serratus male|type=polypeptide|length=80bp
GYGRFYRSLKAQLVAKFGDRISLTATADRGTTGRFEVVLRNTGELLHSKK
RRGQGRCEDPREVEALIEQIQNYLDSASA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011893Selenoprotein_Rdx-typ