prot_F-serratus_M_contig6165.16956.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6165.16956.1
Unique Nameprot_F-serratus_M_contig6165.16956.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length87
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6165.16956.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.130e-29
Identity = 59/74 (79.73%), Postives = 61/74 (82.43%), Query Frame = 0 
Query:   13 DTGTGRDRCVLNRLLAMYPSQSTGGGXXXASGVALLSALEPMAVTPDFMDYRHSWHLMKVVEALGVAEVPDRLK 86
            D G GRDRCVL  LLAMYPS+  GGG   ASGV+LLSALEPMAVTPD MDYRHSWHLM VVEALGVAEV DR K
Sbjct: 1873 DRGYGRDRCVLRCLLAMYPSRKAGGGVGGASGVSLLSALEPMAVTPDVMDYRHSWHLMNVVEALGVAEVQDRAK 1946
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6165.16956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE1.130e-2979.73Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021967Nuclear protein 96PFAMPF12110Nup96coord: 17..75
e-value: 8.5E-9
score: 34.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6165contigF-serratus_M_contig6165:19532..19792 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6165.16956.1mRNA_F-serratus_M_contig6165.16956.1Fucus serratus malemRNAF-serratus_M_contig6165 19532..19793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6165.16956.1 ID=prot_F-serratus_M_contig6165.16956.1|Name=mRNA_F-serratus_M_contig6165.16956.1|organism=Fucus serratus male|type=polypeptide|length=87bp
EGERKELCGVVADTGTGRDRCVLNRLLAMYPSQSTGGGGGGASGVALLSA
LEPMAVTPDFMDYRHSWHLMKVVEALGVAEVPDRLKV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021967Nup96