prot_F-serratus_M_contig6.16600.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6.16600.1
Unique Nameprot_F-serratus_M_contig6.16600.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length244
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6.16600.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 3.940e-82
Identity = 146/248 (58.87%), Postives = 183/248 (73.79%), Query Frame = 0 
Query:    1 MAMRRSLNLGVRSLATNASSLAGTERMAP-ACLGRGRRWVRGAREGEHAAREGGG----ILLPTALAVRRKGVREFGVMESVQNKIINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAKMPWNKDKDELKNMKMQKHILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRKNRERIPRTQEEMNVMASDPSGTMLIKFMRMKKGGSGQRPSYGF 243
            MAMRRSL   +R + +  +S++G  RMAP +C  RG     G          GGG    +LLPT   V   GVR FGVM+SVQ+KIINRN  KQEK F++QM++LSL + F+LDD+ KIIE PL+KFSAK+PWNK ++EL+ MKMQK +L+ LTP QRKNP+ IR GHRQ IADR G T EDVN  LAA+RE+KAMHGWLSTRRK +ERIP TQEE++VMA+DPSGTML+ FM++K+  SG +PS+ F
Sbjct:    1 MAMRRSLPT-LRPIVS--ASVSGAGRMAPPSCSLRGSGCSGGG---------GGGRDWRVLLPTGRGVEGAGVRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSG-KPSFAF 235
[Close]
BLAST of mRNA_F-serratus_M_contig6.16600.1 vs. uniprot
Match: A0A6A4EA06_9STRA (SRP_SPB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EA06_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.110e-12
Identity = 50/166 (30.12%), Postives = 92/166 (55.42%), Query Frame = 0 
Query:   73 VMESVQNKIINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAK-----MPWNKDKDELKNMKMQKHILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRKNRERIPRTQEEMN-VMASDPSGTMLIKFMRMKK 232
            + ++V  K+  RN  KQ + ++ QM +LSL +KFDL+ +   ++   +   A      +P       ++ MK+   IL+++ P  R++P LI    ++ I+++ G + E++NNML  + ++ A+H WL  R +   R+P T +E   ++  DP+G    KF RMK+
Sbjct:   53 IKKTVSGKLEERNQLKQGEAYKQQMIELSLKEKFDLNGFYDHLKKNADASGATGWRSMIPGVSTMTAVQQMKVFMTILESMEPEYRESPRLINGKAKRKISEKAGHSPEEINNMLRNYEQLSALHIWLKKRVERGLRVPETLDETTELVRQDPTGFPAKKF-RMKQ 217
[Close]
BLAST of mRNA_F-serratus_M_contig6.16600.1 vs. uniprot
Match: A0A225WNL9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNL9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.410e-6
Identity = 49/177 (27.68%), Postives = 86/177 (48.59%), Query Frame = 0 
Query:   69 REFGVMESVQN----KIINRNVGKQEKLFRDQMKDLSLLDKFDLDDYVKIIETPLEKFSAK--------MPWNKDKDELKNMKMQKHILDNLTPTQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRKNRERIPRTQEEMN-VMASDPSGTMLIKFMRMKK 232
            R  GV+ +++N    K+  RN  KQE+ ++ QM DLS LDKFDL+ +   ++  ++   A         +P       ++ MK    ILD++     ++   +           +  + E++NNML  + ++ A+H WL  R +    IP + +E   ++  DP+G    KF RMK+
Sbjct:   39 RSMGVLSNIKNTVSGKLEERNQHKQEEAYKQQMIDLSQLDKFDLNGFYDHLKVDIKNAEASGASGWRSMIPGVSSMTAVQQMKAFMGILDSMEIRDTEDGCFV-------FTTFVLQSPEEINNMLRNYEQLSALHIWLVKRVERGLSIPESMDETTELVRQDPTGFPAKKF-RMKQ 207
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6.16600.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNI7_ECTSI3.940e-8258.87SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6A4EA06_9STRA5.110e-1230.12SRP_SPB domain-containing protein n=3 Tax=Phytopht... [more]
A0A225WNL9_9STRA7.410e-627.68Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 118..191
e-value: 3.2E-8
score: 34.1
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 91..216
e-value: 5.2E-11
score: 44.3
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 96..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6contigF-serratus_M_contig6:499909..505569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6.16600.1mRNA_F-serratus_M_contig6.16600.1Fucus serratus malemRNAF-serratus_M_contig6 499835..505942 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6.16600.1 ID=prot_F-serratus_M_contig6.16600.1|Name=mRNA_F-serratus_M_contig6.16600.1|organism=Fucus serratus male|type=polypeptide|length=244bp
MAMRRSLNLGVRSLATNASSLAGTERMAPACLGRGRRWVRGAREGEHAAR
EGGGILLPTALAVRRKGVREFGVMESVQNKIINRNVGKQEKLFRDQMKDL
SLLDKFDLDDYVKIIETPLEKFSAKMPWNKDKDELKNMKMQKHILDNLTP
TQRKNPDLIRAGHRQAIADRIGCTVEDVNNMLAAFREIKAMHGWLSTRRK
NRERIPRTQEEMNVMASDPSGTMLIKFMRMKKGGSGQRPSYGF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf