prot_F-serratus_M_contig6.16586.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6.16586.1
Unique Nameprot_F-serratus_M_contig6.16586.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length138
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6.16586.1 vs. uniprot
Match: D7FYA3_ECTSI (TFIIIC_sub6 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA3_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 7.530e-36
Identity = 59/99 (59.60%), Postives = 81/99 (81.82%), Query Frame = 0 
Query:   37 EEYEEEDVYVMVELPPDIDGEELLSASTVTVQRVGTSNPTLRVGDEVFTGKTEPIVGTTIVFKTPPPGAAGSRPLELACYSNMRMNFNNPGERRRKKTK 135
            EEY+EEDVY++V+LPP +DGE LLSAS+V+V+ +GT  P L+VG+EV+ G  EPI+GTT+ F TP PGA+G  PLELAC+SNM+M F+ P  RR++++K
Sbjct:    5 EEYDEEDVYIVVDLPPAVDGEALLSASSVSVKGIGTKTPQLKVGEEVYEGNAEPIIGTTMAFTTPKPGASGREPLELACFSNMKMAFSQPPARRQRRSK 103
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6.16586.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYA3_ECTSI7.530e-3659.60TFIIIC_sub6 domain-containing protein n=1 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019481Transcription factor TFIIIC, triple barrel domainPFAMPF10419TFIIIC_sub6coord: 40..124
e-value: 1.3E-9
score: 37.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6contigF-serratus_M_contig6:18772..85618 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6.16586.1mRNA_F-serratus_M_contig6.16586.1Fucus serratus malemRNAF-serratus_M_contig6 18585..86189 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6.16586.1 ID=prot_F-serratus_M_contig6.16586.1|Name=mRNA_F-serratus_M_contig6.16586.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MMAGGAGEANGAAQTTERQLDDGEVGEKVRPDDVDGEEYEEEDVYVMVEL
PPDIDGEELLSASTVTVQRVGTSNPTLRVGDEVFTGKTEPIVGTTIVFKT
PPPGAAGSRPLELACYSNMRMNFNNPGERRRKKTKRT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019481TFIIIC_triple_barrel