prot_F-serratus_M_contig1452.3215.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1452.3215.1
Unique Nameprot_F-serratus_M_contig1452.3215.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length296
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1452.3215.1 vs. uniprot
Match: D8LI08_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI08_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 5.210e-101
Identity = 160/295 (54.24%), Postives = 205/295 (69.49%), Query Frame = 0 
Query:    4 SQRRSVVDRIARVIGLLVLGCVETTLAFVAHTS-RHLSIRCDERSAVLQSAAATVVVRRPSPTYPNRTQRPSGFLQSWQNQAKSTRAKPG--PVLRGVQDGNVASSAAEGGGTGGEDQTTQTYDENEDMGMAPVDMEQAMGSFSPEWSNSTARVDPREHLIKGSVITANQTVFPYAIDSFPPLLNSEVYYNGTSERFWWNQNAEAVCIYAPVPRGFDPQKVDFVAKSRHVSLKLDGEEVLTGTPFYRISGYDSLFVVDMENDPPYVQLELYKIREYQNWEDLILEVSDFTPGGSQ 295
             +R+ ++ R A  +GLL+    + + AFV H      +  CD  +       +  +++     + +RT R      +   Q    +A+ G  P L   + G  A++A+ GGG GG++Q         D  MAPVD++QAMGSFSPEW+N TARV+ +E LIKGSVI ANQTVFPY+IDSFPPL NSEVYYNGTSER+WWNQNA+AV +Y PVP+ FD +KV+FVAK+RH+SLK DGEEVL GTPFYRI GYDSLFV+D +NDPPYVQLEL+K+REYQNWED +LE SDFTPGG+Q
Sbjct:    5 GRRKPLMRRAALALGLLLPSLDQVSDAFVFHAPVPSTASPCDHAAFESVGLTSNCLLK----AWSSRTSRTGRKAPAPDGQRHQGKARRGIRPALMSFEPGVEAAAASAGGGDGGQEQGF-------DGDMAPVDLDQAMGSFSPEWANGTARVEAKEQLIKGSVIAANQTVFPYSIDSFPPLTNSEVYYNGTSERYWWNQNADAVSVYVPVPKDFDAEKVEFVAKTRHISLKFDGEEVLAGTPFYRIDGYDSLFVLDSDNDPPYVQLELFKVREYQNWEDFLLEKSDFTPGGAQ 288
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1452.3215.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI08_ECTSI5.210e-10154.24CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 192..284
e-value: 2.3E-10
score: 42.9
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 189..284
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..295
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR007052CS domainPROSITEPS51203CScoord: 192..283
score: 9.615

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1452contigF-serratus_M_contig1452:55321..66808 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1452.3215.1mRNA_F-serratus_M_contig1452.3215.1Fucus serratus malemRNAF-serratus_M_contig1452 55129..66824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1452.3215.1 ID=prot_F-serratus_M_contig1452.3215.1|Name=mRNA_F-serratus_M_contig1452.3215.1|organism=Fucus serratus male|type=polypeptide|length=296bp
MVISQRRSVVDRIARVIGLLVLGCVETTLAFVAHTSRHLSIRCDERSAVL
QSAAATVVVRRPSPTYPNRTQRPSGFLQSWQNQAKSTRAKPGPVLRGVQD
GNVASSAAEGGGTGGEDQTTQTYDENEDMGMAPVDMEQAMGSFSPEWSNS
TARVDPREHLIKGSVITANQTVFPYAIDSFPPLLNSEVYYNGTSERFWWN
QNAEAVCIYAPVPRGFDPQKVDFVAKSRHVSLKLDGEEVLTGTPFYRISG
YDSLFVVDMENDPPYVQLELYKIREYQNWEDLILEVSDFTPGGSQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom