prot_F-serratus_M_contig1227.1727.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1227.1727.1
Unique Nameprot_F-serratus_M_contig1227.1727.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length1085
Homology
BLAST of mRNA_F-serratus_M_contig1227.1727.1 vs. uniprot
Match: D7FMK4_ECTSI (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK4_ECTSI)

HSP 1 Score: 615 bits (1585), Expect = 4.800e-198
Identity = 461/1106 (41.68%), Postives = 589/1106 (53.25%), Query Frame = 0
Query:    3 VHAREGETITAPTANARQKRYLYEVVQKAMDKAMDNKDATDGRSHDHELGPNPLLAAYQVCHDLCSSMVLEILHGQAQKLSARIGGFWATHLVVVFHKEAQASFQFCFCSQYVLDLCFWHREFSTGLAGTGREVGIGGVRALNGDGSLLHHPSEGEPAANLPPPPSGCRYIRVHRPVDRKRQQMVASLGPAAELQTTEKLESGRGNGGIEGKKADLDDVSVNGGAVHVRADKLSCARLLLVATRMFASQKIDALASDVKSLAHQLGISNKFIGVTILGGLTARISSSNQNGALDVWLEVSVDARSGRYLVKDSGFATRKLGTVNFISRLEEALNLLPGSDSQSLGEKVTMALSTGG---REPNVKNGSIHGGQQQDLRQQQVRRCMAECFGVLRRTEIEDILRRGLGLVPHQRWQALLGRRNAERRNV---IPAIGWNAESVFRNATYSLIQQFREY-----EGCRXXXXXXXXXXXXXXXXXXXXXXXXXXVGTMSTLTLPEAKRVATTASP-PGDVTEPSRGAVGPPLLTSSVVPDLHHVGPGVLPTVAASMMKDSNRGEGSTTQPPRAVPTCSLRGCQLGRETSEVLSFFLEIGITENLELEHTLLVAGLPTTATGPGRYSLRRSVRETYTL-DVQVNPGTGRGSY----LPTGTPTTDSQQFALLGKRSASFMESGQVERSVG--SGLTTDEAIPTLSPGKGLVTPEGTEAELHKVVSMAKRFIPFARLQHVVLRLSVGTALSLDIQGLARSLESPVGPLSCAVDLFLGGKEGWSSPEVAAEAASVKFYGGHVEAECWEWDVTLGPGTMLMDY----SGPDHGVGEAGIALELVKKELPLIENTFVGALKAPGDAMGMEHCGKSLGKHIKFRFPPLFSIRAMCRSFALSGEGLAVMRTLAAQAIELQRSQGCGSGGGYSVLSCSPIHVAMHDPLSDHVVVLTHSAFLVEHITSQERPGLVLMPLSDDVPTCPAAIQELQAAVSKHGDLRALLHGLSRTIPVLMAVSRVVPGVASVAGAPGSFGFGRSYSSAEGEFVLEPVSPACFVLS----ARSKPETRPPLTLLIEAGGHVRVTGLVDRKEDAVVNTSVLQDLLLEWIAT 1081
            V AREGE+ITAP  + RQ+RYL+EV+QKAMD   D          D    PN LLAAYQVCHDLC SMVLEILH QAQKL+ R+GG WA  L V+FHK++Q                                                                                  +VA+LGP  E      L S  G+  +   +      S+   +V +  DKLSCAR+LL A R+FASQK++ LA+DV+S A QLG       VT +GGL+A I      G     +EVSVD +SGRYLVKD+     K    + ISRL EALNLLP +DSQSLGE +   LS G    ++ ++       G+Q DLRQQ VRRCM E FG+LRR E+E   R   G+VPH RWQALLGR +A   +     P +  +     R++    + QFRE      E  R                          +G + T     A     +A P  GD++  S    G   L +++   L  V  G     + S    ++RG GS     +A    S  G  L  ET EVLSFFLE+ IT NL++EHT++ A LPT   G  R SLR  V ETY L   Q   G+  GS     LP+  P       A+  KRSAS +++G  + ++G  +G+       TL    G V  E ++ +L   V M  RF+PFARLQH +LR  VGT LSLD + L     +      CAV  FL G+ GWSSPEVAA +A V F+ GH +A+ WEWDVTLGP T LMD+       D   G A +   +V ++LPL ++  +  ++  G          + GKH++FRFPP FS+ AMCRSFAL+GEGL VM+TLAAQA +L R  GC    GYSV+SCSPIHVAM D   DHVV+LTHSAF   HI+S +RPGLVL+P     PTCPAA++EL+A+V KH DL ALLHGLSRT+PVL  VSRV+PGV S AG  G        S + GEFVL  V+PA FVLS       + +++P LTL +EAGG VRV+     ++D V +T  L+ LLLEWIA+
Sbjct:  232 VQAREGESITAPVRDFRQQRYLHEVIQKAMDVHADG---------DANPRPNALLAAYQVCHDLCCSMVLEILHAQAQKLATRVGGLWAAQLAVMFHKDSQ----------------------------------------------------------------------------------IVAALGPPGEFLEGRGLGSDVGDHSVTTDEETSAVDSLLTSSVQIYPDKLSCARMLLAAARIFASQKVNTLAADVESYAAQLGACVP--RVTTVGGLSAYICPWGGGG-----VEVSVDVKSGRYLVKDTLPGGGK-AMASCISRLREALNLLPLTDSQSLGESIASTLSAGRSVLQKRSIPTQRARNGEQ-DLRQQHVRRCMGESFGLLRRGELEHTFRCAFGVVPHLRWQALLGRTDANAIDAGTEFPRL--DGSDTLRSSVR--LGQFRENGVLLSEAWRKRTRNFRILRRGTSAIELTRAERAATIGQVPTAASAGAGFRLNSAPPLDGDLSCSSGWQQGGGTLPAALAASLAEVSDGGDDMASRSTRWRTDRGVGSGANGVKA----SSEGNVL-EETGEVLSFFLEVDITGNLDVEHTVVSATLPTA--GRARKSLRPVVGETYKLFPCQPLSGSRCGSLDADLLPSKPPP------AVGTKRSASCLDAGYSQGAIGITTGVHDGLCPTTLHAAVGTVG-EASQTQLCTAVQMCNRFVPFARLQHALLR--VGTGLSLDFRELTHFSGATQQVPHCAV--FLAGEHGWSSPEVAASSARVSFFPGHTQADTWEWDVTLGPTTSLMDFIWAVPAKDEDKGLA-VTRGIVHEQLPLAQHIEILGVRQEG-IESSSTTRMAQGKHVRFRFPPPFSVHAMCRSFALAGEGLTVMQTLAAQASKL-RQTGC-EAAGYSVVSCSPIHVAMRDSKLDHVVLLTHSAFSSRHISSADRPGLVLIPWPH-APTCPAAMRELEASVRKHRDLNALLHGLSRTVPVLAEVSRVLPGVGSAAGMNGD------RSPSRGEFVLTAVTPARFVLSKSPLGERRLQSKPALTLAVEAGGQVRVS--TPGRKDVVADTGALRRLLLEWIAS 1202          
BLAST of mRNA_F-serratus_M_contig1227.1727.1 vs. uniprot
Match: A0A836CA29_9STRA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA29_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.110e-10
Identity = 107/379 (28.23%), Postives = 141/379 (37.20%), Query Frame = 0
Query:   55 PLLAAYQVCHDLCSSMVLEILHGQAQKLSARIGGFWATHLVVVFHKEAQASFQFCFCSQYVLDLCFWHREFSTGLAGTGREVGIGGVRALNGDGSLLHHPSEGEPAANLPPPPSGCRYIRVH--RPVDRKRQQMVA-SLGPAAELQTTEKLESGRGNGGIEGKKADLDDVSVNGGAVHVRADKLSCARLLLVATRMFASQKIDALASDVKSLAH--QLGISNKFIGVTI---LGGLTARISSSNQNGALDVWLEVSVDARSGRYLVKDSGFATRKLGTVNFISRLEEALNLLPGSDSQSLGEKVTMALSTGGREPNVKNGSIHGGQQQDLRQQQVRRCMAECFGVLRRTEI---EDILRRGLGLVPHQRWQALLGRRNA 422
            PLL AY++ HD C    LE+L  QAQ L AR G  W   L  V  + A+           VLD+  W +E+   L                   +    P  G P   +PPP  G R+IRVH  RP     +  +   LGP A    TE                          A+H+ A  LS +RL+  A R F  +K+  LA DV +       G      GV      GG   R+++    GALD+    + D R+GR +V  S  A  +       + L EAL L PG+  ++  +   M                       LR        A     LR   +   E     GLGL P  RW ALLGR  A
Sbjct:  339 PLLTAYRLAHDFCMGAQLELLSVQAQAL-ARPGAPWHGCLRAVLDRAAR-----------VLDIIVWEQEYGPALP------------------TAAPPPPRGAPVNGVPPPAQG-RFIRVHVQRPETADAEAHIRIQLGPGAAEAATE-------------------------AALHIDAAALSASRLVRDAVRTFTRRKLAVLAPDVAAALRGAPAGGXXXXSGVRARLHAGGRALRVAARG-GGALDI----AADLRTGRCVVL-SERAEARPDASGAHAALLEALALPPGAAGRAHAQGRAM-----------------------LR--------ARLMAALRMAALDAAEAAAACGLGLEPQWRWGALLGRGGA 624          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1227.1727.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMK4_ECTSI4.800e-19841.68Mediator of RNA polymerase II transcription subuni... [more]
A0A836CA29_9STRA3.110e-1028.23Mediator of RNA polymerase II transcription subuni... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013947Mediator complex, subunit Med14PANTHERPTHR12809MEDIATOR COMPLEX SUBUNITcoord: 14..344

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1227contigF-serratus_M_contig1227:5595..13644 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1227.1727.1mRNA_F-serratus_M_contig1227.1727.1Fucus serratus malemRNAF-serratus_M_contig1227 5595..16616 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1227.1727.1 ID=prot_F-serratus_M_contig1227.1727.1|Name=mRNA_F-serratus_M_contig1227.1727.1|organism=Fucus serratus male|type=polypeptide|length=1085bp
MKVHAREGETITAPTANARQKRYLYEVVQKAMDKAMDNKDATDGRSHDHE
LGPNPLLAAYQVCHDLCSSMVLEILHGQAQKLSARIGGFWATHLVVVFHK
EAQASFQFCFCSQYVLDLCFWHREFSTGLAGTGREVGIGGVRALNGDGSL
LHHPSEGEPAANLPPPPSGCRYIRVHRPVDRKRQQMVASLGPAAELQTTE
KLESGRGNGGIEGKKADLDDVSVNGGAVHVRADKLSCARLLLVATRMFAS
QKIDALASDVKSLAHQLGISNKFIGVTILGGLTARISSSNQNGALDVWLE
VSVDARSGRYLVKDSGFATRKLGTVNFISRLEEALNLLPGSDSQSLGEKV
TMALSTGGREPNVKNGSIHGGQQQDLRQQQVRRCMAECFGVLRRTEIEDI
LRRGLGLVPHQRWQALLGRRNAERRNVIPAIGWNAESVFRNATYSLIQQF
REYEGCRGCKECRGFRIFGEMKGKGGPGREGNEVGTMSTLTLPEAKRVAT
TASPPGDVTEPSRGAVGPPLLTSSVVPDLHHVGPGVLPTVAASMMKDSNR
GEGSTTQPPRAVPTCSLRGCQLGRETSEVLSFFLEIGITENLELEHTLLV
AGLPTTATGPGRYSLRRSVRETYTLDVQVNPGTGRGSYLPTGTPTTDSQQ
FALLGKRSASFMESGQVERSVGSGLTTDEAIPTLSPGKGLVTPEGTEAEL
HKVVSMAKRFIPFARLQHVVLRLSVGTALSLDIQGLARSLESPVGPLSCA
VDLFLGGKEGWSSPEVAAEAASVKFYGGHVEAECWEWDVTLGPGTMLMDY
SGPDHGVGEAGIALELVKKELPLIENTFVGALKAPGDAMGMEHCGKSLGK
HIKFRFPPLFSIRAMCRSFALSGEGLAVMRTLAAQAIELQRSQGCGSGGG
YSVLSCSPIHVAMHDPLSDHVVVLTHSAFLVEHITSQERPGLVLMPLSDD
VPTCPAAIQELQAAVSKHGDLRALLHGLSRTIPVLMAVSRVVPGVASVAG
APGSFGFGRSYSSAEGEFVLEPVSPACFVLSARSKPETRPPLTLLIEAGG
HVRVTGLVDRKEDAVVNTSVLQDLLLEWIATGPT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013947Mediator_Med14