prot_F-serratus_M_contig108.770.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig108.770.1
Unique Nameprot_F-serratus_M_contig108.770.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length333
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 68..187
e-value: 6.2E-11
score: 42.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..65
e-value: 2.2E-10
score: 42.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 66..238
e-value: 4.9E-31
score: 110.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 3..59
e-value: 0.0011
score: 18.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 90..123
e-value: 3.3E-5
score: 21.8
coord: 130..157
e-value: 0.0015
score: 16.5
coord: 18..50
e-value: 0.0031
score: 15.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 87..121
score: 10.139
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 50..86
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 15..49
score: 10.106
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 157..187
score: 6.215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 122..156
score: 9.471
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 66..222
coord: 5..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:798187..839284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.770.1mRNA_F-serratus_M_contig108.770.1Fucus serratus malemRNAF-serratus_M_contig108 798068..839290 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig108.770.1 ID=prot_F-serratus_M_contig108.770.1|Name=mRNA_F-serratus_M_contig108.770.1|organism=Fucus serratus male|type=polypeptide|length=333bp
MPLVEEMRAAGHTPDQLSYNLALLACAKKGEAAKTLQLLGDMRRAGLLPT
SVSYGAAMSSLQRAGSGDIDQALSALRRMKWVGVQPTLEAFNAAFSLCAK
NARRSEAVRLMNEMKEEGVAPDERTFLFAIQACGRAGDASGALVMLRGMQ
RAGIAPGEDAFASTMEAFAEGGDVDQVLALLKEARDSAGSDDYGPCWPCV
VIASRTCAAAGRTDDAVRLLQELPVDGDERERVDNPRTDSDSSPSLSSVG
SPASLPTETAMATEGDSDDLAKWGAGGRKEEAWLEAFWAAAGTGDAEATL
AIVGAARGTGVTLTIEHYNRALRALAGGSRSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat