prot_F-serratus_M_contig108.769.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig108.769.1
Unique Nameprot_F-serratus_M_contig108.769.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length183
Homology
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BLAST of mRNA_F-serratus_M_contig108.769.1 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.060e-13
Identity = 56/149 (37.58%), Postives = 73/149 (48.99%), Query Frame = 0 
Query:   31 SLQGGRLLDADGGYTARRVNSTPPRPRRPGKVVPTGGG----QEGDRG-----------RNRASAALVE------------KQRSLARAIKLKGQGLDWRGALSALNSSDVPPSVQCYNATIAAMATSGRWREALALLSDMRRLGFAPD 152
            SL G RLLD+DG   A    +   + RR  +    GG     +EG +G           R +A   +V               R L R IK +G+  DWRGAL AL S++     +C+ + + AMATSGRW+EALALL DM R G  PD
Sbjct:   48 SLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPD 196
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTS0_ECTSI2.060e-1337.58PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 116..163
e-value: 3.3E-12
score: 46.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 154..182
e-value: 0.001
score: 17.1
coord: 120..152
e-value: 1.4E-5
score: 23.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 152..183
score: 9.635
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..151
score: 11.115
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 77..183
e-value: 4.9E-20
score: 73.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 110..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:746818..779896 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.769.1mRNA_F-serratus_M_contig108.769.1Fucus serratus malemRNAF-serratus_M_contig108 746817..779896 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig108.769.1 ID=prot_F-serratus_M_contig108.769.1|Name=mRNA_F-serratus_M_contig108.769.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MQVQQPRARIGSGATISRRMRSMLAPCRGFSLQGGRLLDADGGYTARRVN
STPPRPRRPGKVVPTGGGQEGDRGRNRASAALVEKQRSLARAIKLKGQGL
DWRGALSALNSSDVPPSVQCYNATIAAMATSGRWREALALLSDMRRLGFA
PDNYTYSAAMKACGAADQAEEALALLDVMRKGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf