prot_F-serratus_M_contig1056.577.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1056.577.1
Unique Nameprot_F-serratus_M_contig1056.577.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length596
Homology
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: K9EZ64_9CYAN (Signal recognition particle protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=K9EZ64_9CYAN)

HSP 1 Score: 461 bits (1187), Expect = 2.030e-154
Identity = 253/446 (56.73%), Postives = 332/446 (74.44%), Query Frame = 0
Query:  100 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQMAGGAP 545
            MF+ L+E   +      GQ  I++S++  AL+EVRRALL+ADV+  V    V  V+EK  G ++V GV P+QQFIK++ DELV +MG    PLA   +  PTV+L+AGLQGTGKTTA+AKLA +L++QE +    +LVA DVYRPAA+DQLITLGK+I+V VF MG   +PV+I KAG+A+A+++G DTVIVDTAGR  +D  +M EL+ I+ A + DEVLLVVDAMTGQEAATL   F+E+IGITGAILTK+DGD+RGGAALS++ +S KPIKF+G+GEK++ L+PFYPDRMASRILGMGDV+TLVEKAQ+E+   +AE++  K++   FDFNDFLKQ+R+MKNMGSL G+ K++PGM+ KLS  QL Q E  ++R E +I  MT +ER +P LL + P    R RRIAK +G     VS  + +FQ M+S M +MG+   GG P
Sbjct:    1 MFEALSERFESAWKTLRGQDKISDSNIKEALREVRRALLEADVSFNVVKDFVVDVQEKAQGAEVVSGVAPDQQFIKIVYDELVALMGDANEPLAD-VESKPTVVLMAGLQGTGKTTASAKLALHLRKQERS---AMLVATDVYRPAAVDQLITLGKQIKVPVFEMGTDANPVDIAKAGIAKAQEDGVDTVIVDTAGRLQIDQDMMAELEQIKTAISPDEVLLVVDAMTGQEAATLTQTFHEQIGITGAILTKMDGDSRGGAALSIRQISGKPIKFIGIGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEVDIADAEKLQAKILEARFDFNDFLKQTRLMKNMGSLTGIMKLIPGMSNKLSADQLQQGETQLRRCEAMINSMTKQEREDPDLLANSPG---RRRRIAKGSGYNDKDVSKLVSDFQKMRSMMKQMGQGGMGGFP 439          
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: UPI001408B20F (signal recognition particle protein n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI001408B20F)

HSP 1 Score: 460 bits (1183), Expect = 5.820e-154
Identity = 259/449 (57.68%), Postives = 334/449 (74.39%), Query Frame = 0
Query:  100 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQMAGGAPGGG 548
            MFD L+E + +      GQ  I+ES+V  ALKEVRRALL+ADVNL+V  + +E V+ K +G ++V GV+P+QQFIK++++ELV +MG   APLA R +  PT+IL+AGLQGTGKTTA AKLA +L++Q+     VLLVA DVYRPAA+DQLITLGK+I V VF  G   DPV+I + GLA+A+ +  DTVI+DTAGR  +D  +M EL  ++ A   DE LLVVDAMTGQEAA L   F+E+IGITGAILTK+DGDTRGGAALS++ VS +PIKFVG+GEK++ L+PFYPDRMASRILGMGD++TLVEKAQ+E+   +A +M +K++   FDF DFLKQ R++KNMGSLGGV K++PGM  KLS  QL Q E+ +KR E +I  MT EERR P LL S+P+  QR   IA  +G+K++ VS  + +F  M+S M + G  M GG PG G
Sbjct:    1 MFDALSERLESAWKKLRGQNKISESNVQDALKEVRRALLEADVNLQVTKKFIEEVRSKALGAEVVAGVSPDQQFIKIVHEELVVLMGETDAPLAHR-ENPPTIILMAGLQGTGKTTACAKLALHLQKQDRT---VLLVATDVYRPAAVDQLITLGKQINVPVFEKGTQADPVDIAREGLAQAQADQIDTVIIDTAGRLQIDQDMMGELAAVKAAVQPDETLLVVDAMTGQEAANLTRSFHEQIGITGAILTKMDGDTRGGAALSIRQVSGQPIKFVGIGEKVEALQPFYPDRMASRILGMGDILTLVEKAQEEVDLADAAKMQQKILEASFDFTDFLKQMRLLKNMGSLGGVMKLIPGM-NKLSTDQLQQGEQQLKRVEAMINSMTQEERRNPDLLSSNPSRRQR---IATGSGLKVADVSKLIADFTRMRSMMQQFG--MGGGLPGMG 439          
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: A0A6J4VZS0_9CYAN (Signal recognition particle protein n=1 Tax=uncultured Synechococcales cyanobacterium TaxID=1936017 RepID=A0A6J4VZS0_9CYAN)

HSP 1 Score: 459 bits (1182), Expect = 8.520e-154
Identity = 259/453 (57.17%), Postives = 333/453 (73.51%), Query Frame = 0
Query:  100 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQ----MAGGAPGGG 548
            MF+ L++ +        GQ  I+ES++  AL+EVRRALL+ADVNL+V    VE V++K +G +++ GV PEQQFIK+++DELV +MG   APLA   D +PT++L+AGLQGTGKTTAAAKLA  L++Q  N    LLVA D+YRPAAIDQL+TLG +I+V VF +G  V+PVEI + G+ RA+ E  +TVI+DTAGR  +D  +M EL  I+      E LLVVDAMTGQEAA L   F+ +IGITGA+LTKLDGDTRGGAALSV+ +S +PIKF+GVGEK++ L+PFYP+RMASRILGMGDV+TLVEKAQ+E    +AE+M +KM++  FDF+DFLKQ+R++KNMGSLGG+ K++PGM  KLS +QL Q E  +KRAE +I  MT EERR P LL   P+   R RRIAK AG  L  VS  + +FQ M+S M +MG+     M GG PG G
Sbjct:    1 MFEALSDRLEGAWKKLRGQDRISESNIQDALREVRRALLEADVNLQVVKDFVEEVRQKALGAQVLTGVQPEQQFIKIVHDELVRVMGETNAPLAI-ADSSPTIVLMAGLQGTGKTTAAAKLALQLRKQNRN---ALLVATDIYRPAAIDQLVTLGNQIDVPVFELGTEVNPVEIARQGVERAKAENINTVIIDTAGRLQIDPEMMGELAQIKKTVQPHETLLVVDAMTGQEAANLTRTFHAEIGITGAVLTKLDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPERMASRILGMGDVLTLVEKAQEEFDLADAEKMQQKMLSASFDFSDFLKQTRLLKNMGSLGGIMKLIPGM-NKLSDEQLQQGETQLKRAEAMIGSMTQEERRNPDLLAGSPS---RRRRIAKGAGYGLEDVSKLVSDFQKMRSLMQQMGRGQFPGMGGGFPGMG 445          
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: B0CBK0_ACAM1 (Signal recognition particle protein n=3 Tax=Acaryochloris TaxID=155977 RepID=B0CBK0_ACAM1)

HSP 1 Score: 459 bits (1181), Expect = 9.220e-154
Identity = 257/450 (57.11%), Postives = 337/450 (74.89%), Query Frame = 0
Query:  100 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGK-QMAGGAPGGG 548
            MF+ L++ + +      GQ  I+ES++  AL+EVRRALL+ADVNL+V    +E V+E  +G +++ GV P+QQFIK+++D+LVEIMG+   PLA  ++  PTVIL+AGLQGTGKTTA AKLA +L++QE+     LLVA D+YRPAAIDQL+TLG++I+V VF +G   +PVEI + GLA AR++  DTVIVDTAGR  +D  +M EL DI+ A   DE LLVVDAMTGQEAA L   F+++IGITGAILTK+DGDTRGGAALS++ +S KPIKFVGVGEK++ L+PFYPDRMASRILGMGDV+TLVEKAQ+E    +AE+M +K++  +FDF DFLKQ R++KNMGSLGGV K++PGM  K+S  QL + E  +K+ E +I  MT EER+ P LL + P+   R RRIAK +G   + V   + EFQ M+S M +MG+ QM G +P GG
Sbjct:    1 MFEALSDRLESAWKTLRGQDKISESNIQDALREVRRALLEADVNLQVVKDFIEEVRESALGAEVITGVQPDQQFIKIVHDQLVEIMGATNEPLAE-SNKPPTVILMAGLQGTGKTTATAKLALHLRKQEQTS---LLVATDIYRPAAIDQLVTLGEQIDVPVFQLGTDANPVEIARQGLAAAREQNVDTVIVDTAGRLQIDPEMMSELADIKKAIKPDETLLVVDAMTGQEAANLTQTFHDQIGITGAILTKMDGDTRGGAALSIRQISGKPIKFVGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEFDIADAEKMQKKIMEAQFDFTDFLKQMRLLKNMGSLGGVMKLIPGM-NKISNSQLQEGETKLKQTEAMINSMTKEERKNPQLLSNSPS---RRRRIAKGSGYTQNDVGKLVTEFQRMRSMMQQMGQGQMPGMSPAGG 442          
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: UPI0017474A0C (signal recognition particle protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017474A0C)

HSP 1 Score: 459 bits (1181), Expect = 1.480e-153
Identity = 249/439 (56.72%), Postives = 325/439 (74.03%), Query Frame = 0
Query:  100 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGK 538
            MFD L + + +      GQ  I+E++V  AL+EVRRALL+ADVNL+V    +  ++EK +G +++ GV P QQFIK++ DELV +MG    PL  + D  PT++L+AGLQGTGKTTA AKLA +L++ E +    LLVA DVYRPAAIDQL+TLGK+I V VF MG   +PVEI + G+ +A+ +G DTVI+DTAGR  +D  +M EL  I+ A    EVLLVVDAMTGQEAA L   F+E+IG+TGAILTK+DGDTRGGAALSV+ +S +PIKF+GVGEK++ L+PFYPDRMASRILGMGDV+TLVE+AQ+E+   +AE++  K++  +FDF DFLKQ+RMMKNMGSL G+ K++PGM GK+S +QL Q E  +KRAE +I+ MT EERR P LL   P+  QR   IAK AG  L+ VS  + +FQ M+S M +MG+
Sbjct:    1 MFDALADRLESAWKKIRGQDKISEANVQEALREVRRALLEADVNLQVVKDFISEIQEKALGAEVISGVNPGQQFIKIIYDELVAVMGETDVPLV-KADTAPTIVLMAGLQGTGKTTATAKLALHLRKLERS---TLLVATDVYRPAAIDQLVTLGKQIGVPVFEMGSDANPVEIARQGIEKAKADGIDTVIIDTAGRLQIDQSMMAELAQIKAAVQPHEVLLVVDAMTGQEAANLTRTFHEQIGVTGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVERAQEEVDLADAEQLQEKILTAKFDFTDFLKQTRMMKNMGSLAGIVKLIPGMGGKISDEQLQQGEAQLKRAEAMISSMTIEERRNPDLLAGSPSRRQR---IAKGAGYSLNDVSKLVNDFQKMRSMMQQMGQ 432          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K9EZ64_9CYAN2.030e-15456.73Signal recognition particle protein n=8 Tax=Cyanob... [more]
UPI001408B20F5.820e-15457.68signal recognition particle protein n=1 Tax=Aphano... [more]
A0A6J4VZS0_9CYAN8.520e-15457.17Signal recognition particle protein n=1 Tax=uncult... [more]
B0CBK0_ACAM19.220e-15457.11Signal recognition particle protein n=3 Tax=Acaryo... [more]
UPI0017474A0C1.480e-15356.72signal recognition particle protein n=1 Tax=Phormi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013822Signal recognition particle SRP54, helical bundleSMARTSM00963SRP54_N_2coord: 100..185
e-value: 1.1E-24
score: 98.0
IPR013822Signal recognition particle SRP54, helical bundlePFAMPF02881SRP54_Ncoord: 105..181
e-value: 2.5E-16
score: 59.6
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 199..349
e-value: 5.4E-10
score: 49.2
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainSMARTSM00962SRP54_3coord: 200..398
e-value: 2.9E-104
score: 362.4
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 200..398
e-value: 6.7E-73
score: 244.5
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 371..384
IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyGENE3D1.20.120.140coord: 104..408
e-value: 3.4E-114
score: 382.9
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 429..533
e-value: 1.7E-22
score: 79.9
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 429..552
e-value: 9.3E-33
score: 114.6
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 429..533
NoneNo IPR availableGENE3D3.40.50.300coord: 189..387
e-value: 3.4E-114
score: 382.9
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..595
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
IPR004780Signal recognition particle proteinTIGRFAMTIGR00959TIGR00959coord: 101..534
e-value: 2.7E-157
score: 522.0
IPR004780Signal recognition particle proteinPANTHERPTHR11564:SF7SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN, CHLOROPLASTICcoord: 100..545
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 100..545
IPR022941Signal recognition particle, SRP54 subunitHAMAPMF_00306SRP54coord: 104..560
score: 31.324
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 141..455

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1056contigF-serratus_M_contig1056:233055..253320 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1056.577.1mRNA_F-serratus_M_contig1056.577.1Fucus serratus malemRNAF-serratus_M_contig1056 233055..253320 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1056.577.1 ID=prot_F-serratus_M_contig1056.577.1|Name=mRNA_F-serratus_M_contig1056.577.1|organism=Fucus serratus male|type=polypeptide|length=596bp
RRLERQLLKYTSVLMYMPTRLVAVAVATAYYASVPSSLAFAPSGVAIDGR
RPLVGAHPPAGRSRLSPSCAVASSNGAFFGYRRAVAISRAPSRASPMKMM
FDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRL
VEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNP
TVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQL
ITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVD
DGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILT
KLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMG
DVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGG
VAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPT
ASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQMAGGAPGGGTS
SEPSPMANLIQDGGSGGGGMNRRQRRLSKKAKEPRGGAATNKGFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013822Signal_recog_particl_SRP54_hlx
IPR003593AAA+_ATPase
IPR000897SRP54_GTPase_dom
IPR042101SRP54_N_sf
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf
IPR004780SRP
IPR022941SRP54
IPR027417P-loop_NTPase