prot_F-serratus_M_contig1046.468.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1046.468.1
Unique Nameprot_F-serratus_M_contig1046.468.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length360
Homology
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 7.050e-96
Identity = 141/175 (80.57%), Postives = 159/175 (90.86%), Query Frame = 0
Query:  185 HDFRSVGTEVFEGGDLEAGETLRGMYDFMDDIVENQHVPTIRDPFDVKGKFHRCPGKKQGKAALPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSEFEIRDTGPGGLYAWAGKGGDHDAMAKAKAVAEANLQKKE-KKRFGSL 358
            +D+RS+G+EV+EGGDLEAGET+RGMYDF+DDIVE QHVPTI+DPFD +G+FHRCPGKKQGKAALP TC+IFDVKELHVN+TPLLKRFVNDA MILGR RTGLCAKCQRKV  T+K ARQMGL+PTVS++E+RDTGPGGLYAWAGK GDHDAMAKAK  AE   +K E KKRFGSL
Sbjct:  225 YDYRSIGSEVYEGGDLEAGETIRGMYDFVDDIVETQHVPTIQDPFDHRGRFHRCPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPTVSDYEVRDTGPGGLYAWAGKDGDHDAMAKAKVAAEMARKKSETKKRFGSL 399          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: A0A836CMS6_9STRA (Ribosomal protein S18-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.600e-23
Identity = 48/94 (51.06%), Postives = 63/94 (67.02%), Query Frame = 0
Query:  223 PTIRDPFDVKGKFHRCPGKKQGKAALPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSEFEIR 316
            PT   P +V    H+CPG +QGK+   G CEIF+  +LH  N  LLKRF + +AMI+ R RTGLCA+CQRKV RT+K AR MG IP +  + ++
Sbjct:    9 PTQLAPGEVTPWIHKCPGHRQGKSGFSGRCEIFNQWDLHFQNVVLLKRFSSASAMIMPRRRTGLCARCQRKVARTVKRARHMGAIPYIGTYGVK 102          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: A0A7S1TPF7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPF7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.080e-12
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 0
Query:  207 RGMYDFMD--DIVENQHVPTIRDPFDVKGKFHRCPGKKQGKAA-LPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSEFEIRD 317
            +G YD  D   + E + VP     F  +     C GKKQ +A+    TC++ D+ E+   N  LL++F++ A  I  R  T LC KCQ+KV RTIK +R +GL+P    F ++D
Sbjct:  190 KGSYDRYDYEGVPEAERVPV----FPWQKTQDNCKGKKQRRASHRAATCDLIDLDEVMPTNVILLRKFIDPAGAIRHRRETKLCNKCQKKVARTIKASRNLGLMPFTQSFRVKD 299          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: A0A7R9YBR6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBR6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.920e-11
Identity = 50/142 (35.21%), Postives = 75/142 (52.82%), Query Frame = 0
Query:  179 EDEGPPHDFRSVGTEVFEGGDLEAGETLRGM--YDFMDDIVENQHVPTIRDPFDVKGKFHRCPGKKQGKAA-LPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSEFEIRD 317
            E +GP  D R V  E  E  D EA         YDF D + ++  VP +  P+  +     C GK+Q +++     C++ D+ E+   N  LL+++V+   MI  R  T LC KCQRKV + IK +R MGL+P +  F ++D
Sbjct:  212 EGDGPDADDR-VSREWVEEEDDEAARAKSNYEKYDF-DGVPQSDRVPLM--PW--QRNTSNCSGKQQRRSSHRAAACDLIDLDEVMPTNVLLLRKYVDSGGMIRHRRETKLCNKCQRKVAKAIKASRNMGLMPFMHNFRVKD 347          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: A0A7S2E188_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E188_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.110e-10
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0
Query:  239 PGKKQGKAALPG-----TCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSEFEIRD 317
            P  K GK    G      C   D+ +LH  N  +L+  ++   MI  R  TGLCAKCQRK ++TIK ARQ+G+IP V E+  RD
Sbjct:  123 PAGKGGKPRRNGHPCKKNCCGIDLDDLHFTNIAMLEYLISPTGMIRPRRHTGLCAKCQRKASKTIKLARQLGMIPFVQEYRTRD 206          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: W7TXB5_9STRA (30s ribosomal protein s18 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXB5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.150e-10
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0
Query:  238 CPGKKQGKAALPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIP 308
            C GK Q +   P  C+  D+ EL  +N  +L +FV+   MI  R  +GLCAKCQRKV RTIK AR +G++P
Sbjct:  114 CRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLP 184          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: W7TNB2_9STRA (30s ribosomal protein s18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.460e-9
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0
Query:  238 CPGKKQGKAALPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIP 308
            C GK Q +   P  C+  D+ EL  +N  +L +FV+   MI  R  +GLCAKCQRKV RTIK AR +G++P
Sbjct:  194 CRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLP 264          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: A0A1J5GR31_9BACT (30S ribosomal protein S18 n=5 Tax=Parcubacteria group TaxID=1794811 RepID=A0A1J5GR31_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 5.570e-8
Identity = 26/57 (45.61%), Postives = 42/57 (73.68%), Query Frame = 0
Query:  256 DVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSE 312
            D+KE+   +T LL++F++  A I G+ RTG+C+K QRK+++ IK AR +GL+P  S+
Sbjct:    9 DIKEIDFKDTELLRKFISGLAKIRGKKRTGVCSKHQRKLSKAIKKARHLGLLPYTSK 65          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: UPI000485855E (30S ribosomal protein S18 n=1 Tax=Meiothermus rufus TaxID=604332 RepID=UPI000485855E)

HSP 1 Score: 58.5 bits (140), Expect = 1.920e-7
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0
Query:  240 GKKQGKAALPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIPTVSEF 313
            G+K   AA  G  ++ DVK + +     LKRF+++   IL R RTGL A+ QRK+ RTIK AR MGL+P V + 
Sbjct:   18 GRKPKVAASVGPFDLNDVKAVDI-----LKRFLSETGKILPRRRTGLTAQEQRKLARTIKRARNMGLLPFVEKL 86          
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Match: A0A3M2EWL2_9DEIN (30S ribosomal protein S18 n=4 Tax=Deinococcus-Thermus TaxID=1297 RepID=A0A3M2EWL2_9DEIN)

HSP 1 Score: 58.5 bits (140), Expect = 2.070e-7
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 0
Query:  240 GKKQGKAALPGTCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKGARQMGLIP 308
            G+K   AA  G  ++ D K     N  +LKRF+++   IL R RTGL AK QRK+ RTIK AR MGL+P
Sbjct:   21 GRKPKVAAAVGPFDLTDFK-----NVEILKRFLSETGKILPRRRTGLSAKEQRKLARTIKRARVMGLLP 84          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1046.468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2B0_ECTSI7.050e-9680.57Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
A0A836CMS6_9STRA1.600e-2351.06Ribosomal protein S18-domain-containing protein n=... [more]
A0A7S1TPF7_9STRA2.080e-1237.72Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YBR6_9STRA5.920e-1135.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2E188_9STRA2.110e-1044.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TXB5_9STRA6.150e-1047.8930s ribosomal protein s18 n=1 Tax=Nannochloropsis ... [more]
W7TNB2_9STRA1.460e-947.8930s ribosomal protein s18 n=2 Tax=Monodopsidaceae ... [more]
A0A1J5GR31_9BACT5.570e-845.6130S ribosomal protein S18 n=5 Tax=Parcubacteria gr... [more]
UPI000485855E1.920e-745.9530S ribosomal protein S18 n=1 Tax=Meiothermus rufu... [more]
A0A3M2EWL2_9DEIN2.070e-749.2830S ribosomal protein S18 n=4 Tax=Deinococcus-Ther... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 333..353
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 216..325
NoneNo IPR availablePANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 216..325
NoneNo IPR availablePRODOMPD002239coord: 264..308
e-value: 4.0E-6
score: 123.0
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 267..277
score: 29.48
coord: 285..299
score: 44.65
coord: 299..309
score: 47.93
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 263..311
e-value: 1.2E-10
score: 39.5
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 263..307
e-value: 8.7E-15
score: 54.7
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10coord: 245..313
e-value: 2.2E-20
score: 74.0
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 254..312

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1046contigF-serratus_M_contig1046:170346..176833 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1046.468.1mRNA_F-serratus_M_contig1046.468.1Fucus serratus malemRNAF-serratus_M_contig1046 169788..176846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1046.468.1 ID=prot_F-serratus_M_contig1046.468.1|Name=mRNA_F-serratus_M_contig1046.468.1|organism=Fucus serratus male|type=polypeptide|length=360bp
MLVVTRAGTRSVRSTTAPAARSLSRAASAPSSPPCWLPPRPSSRSVSRLA
GLSSVTPGERPFGVPCCASRGVRMPFFHTQRRGAATKKGEDSQRAAGKST
AAAGAGGDGEGPGFDSNDNVSHTGDVDIEGLGGESAARQETKKRGGGGVE
GREDRALREEAEKMGIRWSDGEDSVGDGEDEGPPHDFRSVGTEVFEGGDL
EAGETLRGMYDFMDDIVENQHVPTIRDPFDVKGKFHRCPGKKQGKAALPG
TCEIFDVKELHVNNTPLLKRFVNDAAMILGRNRTGLCAKCQRKVTRTIKG
ARQMGLIPTVSEFEIRDTGPGGLYAWAGKGGDHDAMAKAKAVAEANLQKK
EKKRFGSLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
IPR036870Ribosomal_S18_sf