prot_F-serratus_M_contig102.277.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.277.1
Unique Nameprot_F-serratus_M_contig102.277.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length216
Homology
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A8J2S2K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S2K0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.420e-17
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGSGTTPP 64
            MPRY+CDYC  YLTHDSAPGR+QH RGWKH +NVK +Y+Q++  F +Q        SG G  PP
Sbjct:    1 MPRYFCDYCDVYLTHDSAPGRKQHIRGWKHRENVKQYYEQYMKQFYEQN-------SGMGMMPP 57
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A6A3U2G8_9STRA (U1 small nuclear ribonucleoprotein C n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3U2G8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.280e-16
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A024G168_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G168_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.450e-16
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+Q L
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQLL 42
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A1V9Z7R9_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7R9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-16
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMS-GSGTTPPAARPVNPSP 73
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+  + +       NGA M+ G+   P A R   P P
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEATVQN-------NGAMMTPGAWLRPDALRGGPPRP 67
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A3R6X1P8_9STRA (Matrin-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6X1P8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.710e-16
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+  L
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEAML 42
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2S2K0_9STRA4.420e-1757.81Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A6A3U2G8_9STRA1.280e-1680.95U1 small nuclear ribonucleoprotein C n=2 Tax=Phyto... [more]
A0A024G168_9STRA1.450e-1678.57U1 small nuclear ribonucleoprotein C n=1 Tax=Albug... [more]
A0A1V9Z7R9_9STRA1.690e-1655.41U1 small nuclear ribonucleoprotein C n=1 Tax=Achly... [more]
A0A3R6X1P8_9STRA1.710e-1676.19Matrin-type domain-containing protein n=1 Tax=Apha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 4.6E-7
score: 39.5
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..36
e-value: 1.1E-16
score: 60.2
NoneNo IPR availableGENE3D3.30.160.60coord: 1..56
e-value: 4.3E-21
score: 76.8
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..214
e-value: 1.1E-21
score: 76.7
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148FAMILY NOT NAMEDcoord: 1..206
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..167
score: 9.694
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 11.187
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:832808..851856 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.277.1mRNA_F-serratus_M_contig102.277.1Fucus serratus malemRNAF-serratus_M_contig102 832593..851877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.277.1 ID=prot_F-serratus_M_contig102.277.1|Name=mRNA_F-serratus_M_contig102.277.1|organism=Fucus serratus male|type=polypeptide|length=216bp
MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQA
TNGASMSGSGTTPPAARPVNPSPRSMGPAPSGPVVMGSGSLGMGAMSNSL
MPGGGMGGRGPMNGMGPMGGGPMVGGHMAHGPMGGPRGYGMGHPPPPAGF
GMGGPHGGMGPPPNGRMGPRGPPGGYGMAPPLNGGMPGPRIPSAPPQAPP
QAPANANGTTPGDRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR017340U1_snRNP-C
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf